ViewGene
Locus Name:
GeneID:
Location:

GeneID:3089
TrivialName: PA14_27350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27350
PAO1 Ortholog Locus:PA2842
Sequence Length:750
Protein Length:249
Start: 2371917
Stop: 2372666
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06230.1|AE004711_2 (AE004711) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 249/249 (100%), Positives = 249/249 (100%)
Sequence:
GTGGTGAGCGAAGAACGTCTGCTGGTCGAGGAGCGCGACGAATACGGGGTCATCCGGGTCATCGAGTCCGGC
GACTATCGCTTCCTCGAGTTCGGCGACGGTGTCGAGCAGAGCTGCGTGTTCATGCCCGATCCGGCCTGGCTG
GAATACGACTACACCCGCGCCATGCTGCTCGGCGGGCTCTGCCATTCGCAACCGCGTCGCGCGTTGTTCCTC
GGTTTCGGCGCCGGTAGCCTGACCCAGGCCTGCCTGCGTCACCTGCCGCTGGAGGAGGCCGAGGCCATCGAG
CTGCGCCCGGCGATTCCGCGCCTGGCCCGTGAGCATCTGGGGCTGCGCGACGACCCGCGCCTGCGATTGCGC
ATCGGCGACGCACTGGAGAGCCTGGGCGAATGCGCGGAGGCCGACCTGATCTTCCTCGACCTCTATACCGAT
ACCGGCCCGTCGGCCGCGCACCTGGCCTGGAATTTCCTCGGCGCCTGCCAGGAGCGCCTCGCCGAGGATGGC
TGGCTGGTGATCAACCAGTGGAGCGGCACCGATGGCAAGCCGCTGGGCGCGCCGCTGCTGCGCGGGCGCTAT
CACCATCATTACTGGGAGTGTCCGGTGGCCGAGGGCAACGTGGTGATGCTGGTGCCGGCGAACCTGGCCCTC
GAACTCGACCAGGAAGCCCTGCGGACGCGTGCCGCGGCGCTGGAGCCGCAACTCGGCTATTCGTTGCAGGGC
TATATCGACAGCCTGCGCCCGGCCCAGTAG
Translation:
MVSEERLLVEERDEYGVIRVIESGDYRFLEFGDGVEQSCVFMPDPAWLEYDYTRAMLLGGLCHSQPRRALFL
GFGAGSLTQACLRHLPLEEAEAIELRPAIPRLAREHLGLRDDPRLRLRIGDALESLGECAEADLIFLDLYTD
TGPSAAHLAWNFLGACQERLAEDGWLVINQWSGTDGKPLGAPLLRGRYHHHYWECPVAEGNVVMLVPANLAL
ELDQEALRTRAAALEPQLGYSLQGYIDSLRPAQ*
AnnotationID:3097GeneID:3089
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 18:06:20
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2842
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14737




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23323




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36215




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3089_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3089
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4977
                           PA2842_tr
                           translation of PA2842
                           249
                           99.99
                           99.99
                           0
                           1318.0
     

     
     
140459
                           gb|AAG06230.1|AE004711_2
                           (AE004711) hypothetical protein PA2842 [Pseudomonas aeruginosa PAO1]
                           249
                           99.59
                           99.99
                           0
                           1315.0
     

     
     
140461
                           gb|AAN67486.1|AE016375_4
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           251
                           64.54
                           74.50
                           2
                           869.0
     

     
     
140460
                           gb|AAO55293.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           254
                           63.38
                           74.80
                           6
                           870.0
     

     






      

          
GC ORFID: 46091How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2842Glimmer Score: 

          
Start: 2582010Stop: 2581261

          
Length: 750


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2842 translation of PA2842Homolog Bit Score 512.0

          
Other Homologs:  t_PA2842 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGTGAGCGAAGAACGTCTGCTGGTCGAGGAGCGCGACGAATACGGGGTCATCCGGGTCATCGAGTCCGGC 
GACTATCGCTTCCTCGAGTTCGGCGACGGTGTCGAGCAGAGCTGCGTGTTCATGCCCGATCCGGCCTGGCTG 
GAATACGACTACACCCGCGCCATGCTGCTCGGCGGGCTCTGCCATTCGCAACCGCGTCGCGCGTTGTTCCTC 
GGTTTCGGCGCCGGTAGCCTGACCCAGGCCTGCCTGCGTCACCTGCCGCTGGAGGAGGCCGAGGCCATCGAG 
CTGCGCCCGGCGATTCCGCGCCTGGCCCGTGAGCATCTGGGGCTGCGCGACGACCCGCGCCTGCGATTGCGC 
ATCGGCGACGCACTGGAGAGCCTGGGCGAATGCGCGGAGGCCGACCTGATCTTCCTCGACCTCTATACCGAT 
ACCGGCCCGTCGGCCGCGCACCTGGCCTGGAATTTCCTCGGCGCCTGCCAGGAGCGCCTCGCCGAGGATGGC 
TGGCTGGTGATCAACCAGTGGAGCGGCACCGATGGCAAGCCGCTGGGCGCGCCGCTGCTGCGCGGGCGCTAT 
CACCATCATTACTGGGAGTGTCCGGTGGCCGAGGGCAACGTGGTGATGCTGGTGCCGGCGAACCTGGCCCTC 
GAACTCGACCAGGAAGCCCTGCGGACGCGTGCCGCGGCGCTGGAGCCGCAACTCGGCTATTCGTTGCAGGGC 
TATATCGACAGCCTGCGCCCGGCCCAGTAG