ViewGene
Locus Name:
GeneID:
Location:

GeneID:3088
TrivialName: PA14_45520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45520
PAO1 Ortholog Locus:PA1462
Sequence Length:789
Protein Length:262
Start: 4051943
Stop: 4051155
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04851.1|AE004575_10 (AE004575) probable plasmid partitioning protein [Pseudomonas aeruginosa PAO1]
Identities = 262/262 (100%), Positives = 262/262 (100%)
Sequence:
ATGAAAGTCTGGGCAGTCGCCAATCAGAAAGGAGGGGTCGGCAAGACCACCTCGTCCATCGCCCTGGCCGGC
CTGCTGGCGGATGCCGGCAAGCGCGTGGTCGTGGTCGACCTGGACCCCCACGGCTCGATGACCAGCTATTTC
GGCTATGATCCGGACACCCTCGAGCACAGCGCCTTCGACCTGTTCCTGCACCAGGGCAACGTCCCCGAGGGG
CTGCCGGCCTCGCTGCTGCGCAGCACCAGCAACGAACGCATCTCCCTGCTGCCGTCGAGTACCGCGCTGGCC
ACCCTGGAGCGCCAGTCGCCGGGCAAGAGCGGTCTCGGCCTGGTGGTCTCGAAAAGCCTGGCGCAGCTCTGG
CAGGATTTCGACCATGCGATCATCGACAGCCCGCCGCTGCTCGGCGTGCTGATGGTCAATGCCCTGGCCGCC
AGCCAGCACCTGGTGATTCCGGTGCAGACCGAGTTCCTCGCGGTGAAAGGGCTGGAGCGGATGGTCAACACC
CTGGCGATGATCAACCGGTCGCGCAAACAGGCGTTGCCCTATACCATCGTACCTACGCTGTTCGATCGGCGG
ACCCAGGCTTCGCTGAGCACGCTGCGGATTCTCAACGAGAACTACCCGGACAACCTGTGGCAGGCGTTCATT
CCCATCGATACCCGCCTGCGCGATGCCAGCCGGGCCGGGGTCACGCCGTCGCAACACGACGGCAAGAGTCGC
GGGGTGATCGCCTACCGCGCCTTGCTCAAGCATCTGCTGGCGCAGCAGCCGGCCACCCGGGTGGCCTGA
Translation:
MKVWAVANQKGGVGKTTSSIALAGLLADAGKRVVVVDLDPHGSMTSYFGYDPDTLEHSAFDLFLHQGNVPEG
LPASLLRSTSNERISLLPSSTALATLERQSPGKSGLGLVVSKSLAQLWQDFDHAIIDSPPLLGVLMVNALAA
SQHLVIPVQTEFLAVKGLERMVNTLAMINRSRKQALPYTIVPTLFDRRTQASLSTLRILNENYPDNLWQAFI
PIDTRLRDASRAGVTPSQHDGKSRGVIAYRALLKHLLAQQPATRVA*
AnnotationID:3096GeneID:3088
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 13:01:08
Gene Name:
Confidence Code:3
GeneProduct:putative plasmid partitioning protein
Cell Localization:()
Synonyms:PA1462
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1192,pfam00991
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55504.1| (AE016862) ParA family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 262

 Score =  430 bits (1106), Expect = e-120
 Identities = 212/262 (80%), Positives = 244/262 (93%)

>gb|AAN69913.1|AE016630_4 (AE016790) ParA family protein [Pseudomonas putida KT2440]
          Length = 284

 Score =  425 bits (1093), Expect = e-118
 Identities = 212/262 (80%), Positives = 238/262 (90%)

>gb|AAO10357.1|AE016803_144 (AE016803) SOJ-like and chromosome partitioning protein [Vibrio
           vulnificus CMCP6]
          Length = 258

 Score =  259 bits (662), Expect = 1e-68
 Identities = 130/252 (51%), Positives = 183/252 (72%), Gaps = 1/252 (0%)








 
Structural Features:
COG1192, Soj, ATPases involved in chromosome partitioning 
[Cell division and chromosome partitioning]
CD-Length = 259 residues,  96.5% aligned
Score =  195 bits (496), Expect = 4e-51


pfam00991, ParA, ParA family ATPase.
CD-Length = 110 residues,  95.5% aligned
Score = 72.3 bits (177), Expect = 5e-14
Identities = 30/106 (28%), Positives = 57/106 (53%), Gaps = 1/106 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6179




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23321




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37367




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3088_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3088
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4976
                           PA1462_tr
                           translation of PA1462
                           262
                           99.99
                           99.99
                           0
                           1318.0
     

     
     
140446
                           gb|AAG04851.1|AE004575_10
                           (AE004575) probable plasmid partitioning protein [Pseudomonas aeruginosa PAO1]
                           262
                           99.99
                           99.99
                           0
                           1318.0
     

     
     
140447
                           dbj|BAA33553.1|
                           (AB012767) ORF3 [Pseudomonas aeruginosa]
                           262
                           99.99
                           99.99
                           0
                           1318.0
     

     
     
140448
                           gb|AAO55504.1|
                           (AE016862) ParA family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           262
                           80.91
                           93.12
                           0
                           1106.0
     

     
     
140450
                           gb|AAC08068.1|
                           (AF031898) unknown [Pseudomonas putida]
                           277
                           77.25
                           85.55
                           15
                           1073.0
     

     






      

          
GC ORFID: 46090How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1462Glimmer Score: 

          
Start: 901966Stop: 902754

          
Length: 789


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1462 translation of PA1462Homolog Bit Score 512.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7946 (ORF: BLASTX 429.0), t_PA1462 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGTCTGGGCAGTCGCCAATCAGAAAGGAGGGGTCGGCAAGACCACCTCGTCCATCGCCCTGGCCGGC 
CTGCTGGCGGATGCCGGCAAGCGCGTGGTCGTGGTCGACCTGGACCCCCACGGCTCGATGACCAGCTATTTC 
GGCTATGATCCGGACACCCTCGAGCACAGCGCCTTCGACCTGTTCCTGCACCAGGGCAACGTCCCCGAGGGG 
CTGCCGGCCTCGCTGCTGCGCAGCACCAGCAACGAACGCATCTCCCTGCTGCCGTCGAGTACCGCGCTGGCC 
ACCCTGGAGCGCCAGTCGCCGGGCAAGAGCGGTCTCGGCCTGGTGGTCTCGAAAAGCCTGGCGCAGCTCTGG 
CAGGATTTCGACCATGCGATCATCGACAGCCCGCCGCTGCTCGGCGTGCTGATGGTCAATGCCCTGGCCGCC 
AGCCAGCACCTGGTGATTCCGGTGCAGACCGAGTTCCTCGCGGTGAAAGGGCTGGAGCGGATGGTCAACACC 
CTGGCGATGATCAACCGGTCGCGCAAACAGGCGTTGCCCTATACCATCGTACCTACGCTGTTCGATCGGCGG 
ACCCAGGCTTCGCTGAGCACGCTGCGGATTCTCAACGAGAACTACCCGGACAACCTGTGGCAGGCGTTCATT 
CCCATCGATACCCGCCTGCGCGATGCCAGCCGGGCCGGGGTCACGCCGTCGCAACACGACGGCAAGAGTCGC 
GGGGTGATCGCCTACCGCGCCTTGCTCAAGCATCTGCTGGCGCAGCAGCCGGCCACCCGGGTGGCCTGA