ViewGene
Locus Name:
GeneID:
Location:

GeneID:3086
TrivialName: PA14_50430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50430
PAO1 Ortholog Locus:PA1082
Sequence Length:786
Protein Length:261
Start: 4481644
Stop: 4480859
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04471.1|AE004539_13 (AE004539) flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa PAO1]
Identities = 261/261 (100%), Positives = 261/261 (100%)
Sequence:
ATGTTATCGGCACTGTGGGTCAGCAAGACCGGTCTGTCCGCCCAGGACATGAACCTGACCACCATTTCCAAC
AACCTGGCCAACGTATCCACCACCGGCTTCAAGCGCGACCGCGCGGAGTTCCAGGACCTGCTGTACCAGATC
CGGCGCCAGCCGGGCGGCCAGTCGACCCAGGACAGCGAGCTGCCTTCGGGCCTGCAACTGGGTACCGGTGTG
CGCGTCGTCGGCACCCAGAAGATCTTCACCCCGGGCAGCCTGCAGACCACCGAGCAGCCGCTGGATATGGCG
GTCAACGGGCGCGGCTTCTTCCAGGTTCTGCTGCCGGACGGCACCGTGTCCTACACCCGCGACGGCAGCTTC
CACCTGAACTCCGACGGGCAGATCGTCACCTCCAACGGCTTCGCCCTGGAGCCGGCGATCGTGGTGCCCAAC
GAGACCCAGACCTTCACCGTCGGCCAGGACGGCACCGTCTCGGTGACCACCACCGGCAACGCCCAGCCGCAG
GTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCCATCGGCAACAACCTGTTC
CTGGAAACCGGCTCCAGCGGCGCGCCGCAGGTCGGCACGCCGGGTCTCAACGGCCTCGGCACGGTTGCCCAG
AACACCCTGGAAAACTCCAACGTCAACGTGGTCGAGGAACTGGTGAACATGATCACCACCCAGCGCGCCTAC
GAGATGAACTCCAAGGTCATCTCCACCGCCGACCAGATGTTGTCCTTCGTCACCCAGAATCTTTGA
Translation:
MLSALWVSKTGLSAQDMNLTTISNNLANVSTTGFKRDRAEFQDLLYQIRRQPGGQSTQDSELPSGLQLGTGV
RVVGTQKIFTPGSLQTTEQPLDMAVNGRGFFQVLLPDGTVSYTRDGSFHLNSDGQIVTSNGFALEPAIVVPN
ETQTFTVGQDGTVSVTTTGNAQPQVIGNIQTADFINPAGLQAIGNNLFLETGSSGAPQVGTPGLNGLGTVAQ
NTLENSNVNVVEELVNMITTQRAYEMNSKVISTADQMLSFVTQNL*
AnnotationID:3094GeneID:3086
AnnotatorUID: danlee
Modification Date/Time: 2004-05-20 16:04:05
Gene Name:flgG
Confidence Code:2
GeneProduct:flagellar basal-body rod protein FlgG
Cell Localization:()
Synonyms:PA1082
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4786
Secondary Functional Category(ies):Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:
Flagella assembly 
Homology:






 
Structural Features:
COG4786, FlgG, Flagellar basal body rod protein [Cell motility and secretion]
             CD-Length = 265 residues,  99.6% aligned
             Score =  298 bits (764), Expect = 5e-82







   
Genomic Context:
Cluster of flagellar biosynthetic genes from flgB through flgL 






   
Comment:


















    ReferenceID:6175




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23317




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3086
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4971
                           PA1082_tr
                           translation of PA1082
                           261
                           99.99
                           99.99
                           0
                           1318.0
     

     
     
140348
                           gb|AAG04471.1|AE004539_13
                           (AE004539) flagellar basal-body rod protein FlgG [Pseudomonas aeruginosa PAO1]
                           261
                           99.99
                           99.99
                           0
                           1318.0
     

     
     
140349
                           gb|AAN69963.1|AE016634_12
                           (AE016790) flagellar basal-body rod protein FlgG [Pseudomonas putida KT2440]
                           261
                           86.20
                           91.18
                           0
                           1155.0
     

     
     
140350
                           gb|AAO55458.1|
                           (AE016862) flagellar basal-body rod protein FlgG [Pseudomonas syringae pv. tomato str. DC3000]
                           262
                           83.20
                           90.45
                           1
                           1108.0
     

     
     
140351
                           gb|AAM41236.1|
                           (AE012298) flagellar biosynthesis, cell-distal portion of basal-body rod [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           261
                           60.91
                           74.71
                           0
                           823.0
     

     






      

          
GC ORFID: 46088How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1082Glimmer Score: 

          
Start: 472264Stop: 473049

          
Length: 786


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1082 translation of PA1082Homolog Bit Score 512.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7897 (ORF: BLASTX 430.0), t_PA1082 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTATCGGCACTGTGGGTCAGCAAGACCGGTCTGTCCGCCCAGGACATGAACCTGACCACCATTTCCAAC 
AACCTGGCCAACGTATCCACCACCGGCTTCAAGCGCGACCGCGCGGAGTTCCAGGACCTGCTGTACCAGATC 
CGGCGCCAGCCGGGCGGCCAGTCGACCCAGGACAGCGAGCTGCCTTCGGGCCTGCAACTGGGTACCGGTGTG 
CGCGTCGTCGGCACCCAGAAGATCTTCACCCCGGGCAGCCTGCAGACCACCGAGCAGCCGCTGGATATGGCG 
GTCAACGGGCGCGGCTTCTTCCAGGTTCTGCTGCCGGACGGCACCGTGTCCTACACCCGCGACGGCAGCTTC 
CACCTGAACTCCGACGGGCAGATCGTCACCTCCAACGGCTTCGCCCTGGAGCCGGCGATCGTGGTGCCCAAC 
GAGACCCAGACCTTCACCGTCGGCCAGGACGGCACCGTCTCGGTGACCACCACCGGCAACGCCCAGCCGCAG 
GTGATCGGCAACATCCAGACCGCCGACTTCATCAACCCGGCCGGCCTGCAGGCCATCGGCAACAACCTGTTC 
CTGGAAACCGGCTCCAGCGGCGCGCCGCAGGTCGGCACGCCGGGTCTCAACGGCCTCGGCACGGTTGCCCAG 
AACACCCTGGAAAACTCCAACGTCAACGTGGTCGAGGAACTGGTGAACATGATCACCACCCAGCGCGCCTAC 
GAGATGAACTCCAAGGTCATCTCCACCGCCGACCAGATGTTGTCCTTCGTCACCCAGAATCTTTGA