ViewGene
Locus Name:
GeneID:
Location:

GeneID:3082
TrivialName: PA14_57870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57870
PAO1 Ortholog Locus:PA4455
Sequence Length:798
Protein Length:265
Start: 5151673
Stop: 5150876
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07843.1|AE004859_12 (AE004859) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 265/265 (100%), Positives = 265/265 (100%)
Sequence:
ATGCGTAGAGTCTCTCCCCTCGAGCGTATCCGCCTGTTCGGCCGCGCCGGCCTGGACGTGGTCGCCGCGCTC
GGCCGCTCGACCCTGTTCCTCGGCCACGCCCTGCTCGGCCGGCGCACGCCAGGCACCGGGTTGCACCTGCTG
GTGAAGCAACTCTATTCGGTAGGCGTGCTGTCGCTGGCGATCATCGTCGTCTCGGGCCTGTTCATTGGCATG
GTGCTGGCCCTGCAGGGCTACAACATCCTGATTTCCTATGGTTCCGAGCAGGCGGTCGGGCAGATGGTGGCC
CTGACCCTGCTGCGCGAACTGGGGCCGGTGGTGACCGGCCTGCTGTTCGCCGGCCGTGCCGGCTCTGCGCTT
ACCGCGGAAATCGGCAACATGAAGGCCACCGAACAGCTTTCCAGCCTGGAAATGATCGGTGTCGACCCGCTC
AAGTACATCGTCGCGCCGCGCCTGTGGGCCGGTTTCATCTCCATGCCGCTGCTCGCCGCGATCTTCAGCGTG
GTCGGCATCTGGGGCGGGGCGATGGTCGCGGTCGACTGGCTGGGCGTATACGAGGGGTCGTTCTGGGCGAAC
ATGCAGAACAGCGTGCAGTTCACCGAGGATGTGCTCAACGGCGTGATCAAAAGTATCGTATTCGCCTTCGTG
GTGACCTGGATCGCGGTCTACCAAGGCTACGACTGCGAGCCGACCTCGGAAGGAATCAGCCGGGCGACGACT
CGGACCGTGGTCTATGCCTCCCTGGCGGTGCTGGGGCTCGATTTCATTCTGACTGCTTTGATGTTTGGAGAT
TTCTGA
Translation:
MRRVSPLERIRLFGRAGLDVVAALGRSTLFLGHALLGRRTPGTGLHLLVKQLYSVGVLSLAIIVVSGLFIGM
VLALQGYNILISYGSEQAVGQMVALTLLRELGPVVTGLLFAGRAGSALTAEIGNMKATEQLSSLEMIGVDPL
KYIVAPRLWAGFISMPLLAAIFSVVGIWGGAMVAVDWLGVYEGSFWANMQNSVQFTEDVLNGVIKSIVFAFV
VTWIAVYQGYDCEPTSEGISRATTRTVVYASLAVLGLDFILTALMFGDF*
AnnotationID:3090GeneID:3082
AnnotatorUID: diggins
Modification Date/Time: 2005-05-03 06:06:15
Gene Name:
Confidence Code:3
GeneProduct:putative toluene tolerance ABC efflux transporter
Cell Localization:()
Synonyms:PA4455
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0767
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66584.1|AE016286_8 (AE016777) toluene tolerance ABC efflux transporter, permease
           [Pseudomonas putida KT2440]
          Length = 266

 Score =  445 bits (1145), Expect = e-124
 Identities = 227/265 (85%), Positives = 244/265 (92%)

>gb|AAO57895.1| (AE016872) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 265

 Score =  436 bits (1120), Expect = e-122
 Identities = 219/265 (82%), Positives = 242/265 (91%)

>gb|AAL22181.1| (AE008852) putative ABC superfamily transport protein [Salmonella
           typhimurium LT2]
          Length = 260

 Score =  315 bits (808), Expect = 1e-85
 Identities = 158/258 (61%), Positives = 201/258 (77%)








 
Structural Features:
COG0767, Ttg2B, ABC-type transport system involved in resistance 
to organic solvents, permease component 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 267 residues,  98.1% aligned
Score =  262 bits (671), Expect = 7e-71
Identities = 130/263 (49%), Positives = 175/263 (66%), Gaps = 1/263 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6167




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23309




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31494




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3082_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3082
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4967
                           PA4455_tr
                           translation of PA4455
                           265
                           99.99
                           99.99
                           0
                           1321.0
     

     
     
140245
                           gb|AAG07843.1|AE004859_12
                           (AE004859) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           265
                           99.99
                           99.99
                           0
                           1321.0
     

     
     
140247
                           gb|AAD17958.1|
                           (AF106002) toluene tolerance protein Ttg2B [Pseudomonas putida]
                           265
                           86.03
                           92.07
                           0
                           1145.0
     

     
     
140248
                           dbj|BAB83590.1|
                           (AB066294) toluene resistance protein Trg1 [Pseudomonas putida]
                           265
                           85.66
                           92.07
                           0
                           1145.0
     

     
     
140246
                           gb|AAN66584.1|AE016286_8
                           (AE016777) toluene tolerance ABC efflux transporter, permease [Pseudomonas putida KT2440]
                           266
                           85.33
                           91.72
                           1
                           1145.0
     

     






      

          
GC ORFID: 46084How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4455Glimmer Score: 

          
Start: 4415352Stop: 4414555

          
Length: 798


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4455 translation of PA4455Homolog Bit Score 513.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5520 (ORF: BLASTX 437.0), t_PA4455 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTAGAGTCTCTCCCCTCGAGCGTATCCGCCTGTTCGGCCGCGCCGGCCTGGACGTGGTCGCCGCGCTC 
GGCCGCTCGACCCTGTTCCTCGGCCACGCCCTGCTCGGCCGGCGCACGCCAGGCACCGGGTTGCACCTGCTG 
GTGAAGCAACTCTATTCGGTAGGCGTGCTGTCGCTGGCGATCATCGTCGTCTCGGGCCTGTTCATTGGCATG 
GTGCTGGCCCTGCAGGGCTACAACATCCTGATTTCCTATGGTTCCGAGCAGGCGGTCGGGCAGATGGTGGCC 
CTGACCCTGCTGCGCGAACTGGGGCCGGTGGTGACCGGCCTGCTGTTCGCCGGCCGTGCCGGCTCTGCGCTT 
ACCGCGGAAATCGGCAACATGAAGGCCACCGAACAGCTTTCCAGCCTGGAAATGATCGGTGTCGACCCGCTC 
AAGTACATCGTCGCGCCGCGCCTGTGGGCCGGTTTCATCTCCATGCCGCTGCTCGCCGCGATCTTCAGCGTG 
GTCGGCATCTGGGGCGGGGCGATGGTCGCGGTCGACTGGCTGGGCGTATACGAGGGGTCGTTCTGGGCGAAC 
ATGCAGAACAGCGTGCAGTTCACCGAGGATGTGCTCAACGGCGTGATCAAAAGTATCGTATTCGCCTTCGTG 
GTGACCTGGATCGCGGTCTACCAAGGCTACGACTGCGAGCCGACCTCGGAAGGAATCAGCCGGGCGACGACT 
CGGACCGTGGTCTATGCCTCCCTGGCGGTGCTGGGGCTCGATTTCATTCTGACTGCTTTGATGTTTGGAGAT 
TTCTGA