ViewGene
Locus Name:
GeneID:
Location:

GeneID:3081
TrivialName: PA14_56560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56560
PAO1 Ortholog Locus:PA4350
Sequence Length:756
Protein Length:251
Start: 5042340
Stop: 5043095
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07738.1|AE004851_6 (AE004851) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 251/251 (100%), Positives = 251/251 (100%)
Sequence:
ATGACCCAGACCGCCATTACCCGCGAACCCGTCGCCGGACGCCGCCTGAAGGCCGAGCGCCTGAACGGCGCC
CGCGCCCTGCGCGAGGCCCAGGCCCTGCGCTACCGCGTATTCAGCGCCGAGTTCGACGCCAAGCTCGAAGGC
GCCGAAGACGGCCTCGACCGCGACGACTACGACCGTCACTGCGCACACATCGGCGTCCGCGACCTCGACAGC
GGCGCCCTGGTGGCCACCACCCGGCTGCTCGACCATCGCGCCGCCGAACGCCTCGGGCGCTTCTACAGCGAA
GAGGAGTTCCACCTCTCCGGCCTCGACGCCCTGCACGGCCCGGTCCTGGAGATCGGCCGCACCTGCGTCGCT
CCCGAATACCGCAACGGCGCCACCATCGCGGTACTCTGGGGCGAACTCGCCGAGGTCCTCAACGAGGGCGGC
TACCGCTACCTGATGGGCTGCGCCAGCATTCCCATGCGCGACGGCGGTATGCAGGCCAAGGCGGTGATGCAG
CGGCTGCGCGAACGCTACCTGTGCACCGACTACCTGCAGGCCGAGCCGAAGAACCCGCTGCCGCCGCTGGAC
GTCCCGGAAAACCTCACCGCCGAGCTGCCGCCGCTGCTCAAGGCCTACATGCGCCTGGGCGCGAAGATCTGC
GGCGAGCCCTGCTGGGACCCGGATTTCCAGGTCGCCGACGTGTTCATCCTGCTCAAGCGCGACGAACTCTGC
CCGCGCTACGCCCGCCACTTCAAGGCGGCGGTCTGA
Translation:
MTQTAITREPVAGRRLKAERLNGARALREAQALRYRVFSAEFDAKLEGAEDGLDRDDYDRHCAHIGVRDLDS
GALVATTRLLDHRAAERLGRFYSEEEFHLSGLDALHGPVLEIGRTCVAPEYRNGATIAVLWGELAEVLNEGG
YRYLMGCASIPMRDGGMQAKAVMQRLRERYLCTDYLQAEPKNPLPPLDVPENLTAELPPLLKAYMRLGAKIC
GEPCWDPDFQVADVFILLKRDELCPRYARHFKAAV*
AnnotationID:3089GeneID:3081
AnnotatorUID: diggins
Modification Date/Time: 2005-05-01 08:08:05
Gene Name:
Confidence Code:3
GeneProduct:putative hemolysin
Cell Localization:()
Synonyms:PA4350
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3176
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3176, Putative hemolysin
CD-Length = 292 residues,  94.2% aligned
Score =  217 bits (553), Expect = 3e-57
Identities = 101/275 (36%), Positives = 132/275 (48%), Gaps = 24/275 (8%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6165




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17103




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3081_cdd.html


    		




 
URL:

















    ReferenceID:23307




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3081
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4966
                           PA4350_tr
                           translation of PA4350
                           251
                           99.99
                           99.99
                           0
                           1321.0
     

     
     
140235
                           gb|AAG07738.1|AE004851_6
                           (AE004851) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           251
                           99.99
                           99.99
                           0
                           1321.0
     

     
     
140236
                           gb|AAN66549.1|AE016283_8
                           (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440]
                           251
                           79.28
                           86.45
                           0
                           1038.0
     

     
     
140237
                           gb|AAO57803.1|
                           (AE016871) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           251
                           76.89
                           86.85
                           0
                           1030.0
     

     
     
140241
                           gb|AAQ58336.1|
                           (AE016912) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           256
                           42.18
                           57.42
                           12
                           514.0
     

     






      

          
GC ORFID: 46083How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4350Glimmer Score: 

          
Start: 4306016Stop: 4306771

          
Length: 756


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4350 translation of PA4350Homolog Bit Score 513.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene1970 (ORF: BLASTX 403.0), t_PA4350 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCAGACCGCCATTACCCGCGAACCCGTCGCCGGACGCCGCCTGAAGGCCGAGCGCCTGAACGGCGCC 
CGCGCCCTGCGCGAGGCCCAGGCCCTGCGCTACCGCGTATTCAGCGCCGAGTTCGACGCCAAGCTCGAAGGC 
GCCGAAGACGGCCTCGACCGCGACGACTACGACCGTCACTGCGCACACATCGGCGTCCGCGACCTCGACAGC 
GGCGCCCTGGTGGCCACCACCCGGCTGCTCGACCATCGCGCCGCCGAACGCCTCGGGCGCTTCTACAGCGAA 
GAGGAGTTCCACCTCTCCGGCCTCGACGCCCTGCACGGCCCGGTCCTGGAGATCGGCCGCACCTGCGTCGCT 
CCCGAATACCGCAACGGCGCCACCATCGCGGTACTCTGGGGCGAACTCGCCGAGGTCCTCAACGAGGGCGGC 
TACCGCTACCTGATGGGCTGCGCCAGCATTCCCATGCGCGACGGCGGTATGCAGGCCAAGGCGGTGATGCAG 
CGGCTGCGCGAACGCTACCTGTGCACCGACTACCTGCAGGCCGAGCCGAAGAACCCGCTGCCGCCGCTGGAC 
GTCCCGGAAAACCTCACCGCCGAGCTGCCGCCGCTGCTCAAGGCCTACATGCGCCTGGGCGCGAAGATCTGC 
GGCGAGCCCTGCTGGGACCCGGATTTCCAGGTCGCCGACGTGTTCATCCTGCTCAAGCGCGACGAACTCTGC 
CCGCGCTACGCCCGCCACTTCAAGGCGGCGGTCTGA