ViewGene

Locus Name:
GeneID:
Location:

GeneID:3080
TrivialName: PA14_10180
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10180
PAO1 Ortholog Locus:PA4158
Sequence Length:798
Protein Length:265
Start: 873549
Stop: 874346
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07545.1|AE004832_5 (AE004832) ferric enterobactin transport protein FepC [Pseudomonas aeruginosa PAO1]
Identities = 265/265 (100%), Positives = 265/265 (100%) to fepC (PA4158) of PAO1.
Sequence:
ATGACCCATCGCCTGCACGCGGACGCCGTGACCTTGCGTCGCGACGCGCGGACCGTTTCGCGGAATCTCTCG
CTGGCCATCCCCGAGGGTTCGTTCAGTGTGATCGTCGGGCCCAACGCCTGCGGCAAGTCGACCCTGCTGGCG
GCATTGTCGCGTCTGTTGGCGCCGGCCGAGGGCCGGGTGGTGCTGGATGGCAGGGATATCCACAGCCTGCCG
GGGCGGGAAGTGGCGCGGCGTCTCGGCCTGCTGCCGCAGAGCGCGCTGGCGCCGGATGGCATCACGGTGGCG
GAGCTGGTGGCGCGCGGACGCTATCCGCACCAGTCGTTCCTGCGCCAGTGGTCGCCGGCGGATGAGCGCGCG
GTAGCGGCGGCGCTACGCGCCACGCGGGTCGACGGCCTGGCCGAGCGACCGCTCGACGCGCTCTCCGGCGGC
CAGCGGCAACGCGTGTGGATCGCCATGGTGCTGGCGCAGGAAACCCCGTTGCTGCTGCTCGACGAGCCGACC
ACCTACCTGGATATCGTCCACCAGATCGAATTGCTCGAACTGCTCGCCGAGCTGAATCGCCAGGGGCGCACC
ATCGTCGCCGTGCTGCACGACCTCAACCAGGCCTGCCGCTATGCCTCGCACCTGATCGCCATGCGTGACGGC
GCGATCCTCGCCGAGGGCGCGCCGGCGCATATCTTCACCGAGCGTCTGGTGGAGGAGGTGTTCGGCTTGCGC
TCGTTGATCATCGCCGACCCGGTCAGCGGCACGCCGCTGCTGGTGCCGCGCGGGATCGCCGCCGACGCGCCG
GGCTGA
Translation:
MTHRLHADAVTLRRDARTVSRNLSLAIPEGSFSVIVGPNACGKSTLLAALSRLLAPAEGRVVLDGRDIHSLP
GREVARRLGLLPQSALAPDGITVAELVARGRYPHQSFLRQWSPADERAVAAALRATRVDGLAERPLDALSGG
QRQRVWIAMVLAQETPLLLLDEPTTYLDIVHQIELLELLAELNRQGRTIVAVLHDLNQACRYASHLIAMRDG
AILAEGAPAHIFTERLVEEVFGLRSLIIADPVSGTPLLVPRGIAADAPG*
AnnotationID:3088GeneID:3080
AnnotatorUID: danlee
Modification Date/Time: 2003-10-20 16:04:44
Gene Name:fepC
Confidence Code:2
GeneProduct:ferric enterobactin transport protein FepC
Cell Localization:(5) Inner membrane-associated
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
100% identical to fepC (PA4158) of PAO1.
Structural Features:
Genomic Context:
Comment:
ReferenceID:6163
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23305
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3080

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4964 PA4158_tr translation of PA4158 265 99.99 99.99 0 1322.0
140078 gb|AAG07545.1|AE004832_5 (AE004832) ferric enterobactin transport protein FepC [Pseudomonas aeruginosa PAO1] 265 99.99 99.99 0 1322.0
140079 gb|AAL46004.1| (AE008953) ABC transporter, nucleotide binding/ATPase protein [iron-siderophore] [Agrobacterium tumefaciens str. C58 (U. Washington)] 281 62.63 74.73 16 885.0
140080 gb|AAK90690.1| (AE007900) AGR_pAT_452p [Agrobacterium tumefaciens str. C58 (Cereon)] 281 62.63 74.73 16 885.0
140081 gb|AAD29087.1|AF082879_3 (AF082879) FepC [Yersinia enterocolitica] 278 62.58 76.25 19 872.0
GC ORFID: 46082How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4158Glimmer Score:
Start: 4080388Stop: 4079591
Length: 798
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4158 translation of PA4158Homolog Bit Score 513.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1470 (ORF: BLASTX 281.0), psyr_15may02_Scaffold2_revised_gene3600 (ORF: BLASTX 243.0), t_PA4706 (ORF: BLASTX 168.0), t_PA4158 (ORF: GLIMMER)
GC ORF Sequence
ATGACCCATCGCCTGCACGCGGACGCCGTGACCTTGCGTCGCGACGCGCGGACCGTTTCGCGGAATCTCTCG
CTGGCCATCCCCGAGGGTTCGTTCAGTGTGATCGTCGGGCCCAACGCCTGCGGCAAGTCGACCCTGCTGGCG
GCATTGTCGCGTCTGTTGGCGCCGGCCGAGGGCCGGGTGGTGCTGGATGGCAGGGATATCCACAGCCTGCCG
GGGCGGGAAGTGGCGCGGCGTCTCGGCCTGCTGCCGCAGAGCGCGCTGGCGCCGGATGGCATCACGGTGGCG
GAGCTGGTGGCGCGCGGACGCTATCCGCACCAGTCGTTCCTGCGCCAGTGGTCGCCGGCGGATGAGCGCGCG
GTAGCGGCGGCGCTACGCGCCACGCGGGTCGACGGCCTGGCCGAGCGACCGCTCGACGCGCTCTCCGGCGGC
CAGCGGCAACGCGTGTGGATCGCCATGGTGCTGGCGCAGGAAACCCCGTTGCTGCTGCTCGACGAGCCGACC
ACCTACCTGGATATCGTCCACCAGATCGAATTGCTCGAACTGCTCGCCGAGCTGAATCGCCAGGGGCGCACC
ATCGTCGCCGTGCTGCACGACCTCAACCAGGCCTGCCGCTATGCCTCGCACCTGATCGCCATGCGTGACGGC
GCGATCCTCGCCGAGGGCGCGCCGGCGCATATCTTCACCGAGCGTCTGGTGGAGGAGGTGTTCGGCTTGCGC
TCGTTGATCATCGCCGACCCGGTCAGCGGCACGCCGCTGCTGGTGCCGCGCGGGATCGCCGCCGACGCGCCG
GGCTGA