ViewGene
Locus Name:
GeneID:
Location:

GeneID:308
TrivialName: PA14_36590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36590
PAO1 Ortholog Locus:PA2163
Sequence Length:2055
Protein Length:684
Start: 3256792
Stop: 3258846
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05551.1|AE004643_4 (AE004643) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 678/684 (99%), Positives = 680/684 (99%)
Sequence:
ATGAGTGACGCACGCCTGGCCGAACTGGCCGCCGCCGTGGGCCTGCAACTCGACTGGCAGGACGCCAACGGA
CGGTCGCAGCGGGTCGACCCGGAGGTCCAGCGCGGCCTGCTGGAAGCACTCGGCTATCCGGCGCAGAGTCCG
CAACAGATCGAACAGAGCCTGGCCGCGCTGGCCCGGCTGCGCGAGGACAGCGCCAACCTCGGACTGCTGGTC
GGCGAATGCGGCCAGCCGCTGGAGCAAGCGCTCGGCCCCGCCGGCACCCCGGGCGAACTGGTCTACGAGGAC
GGCACGCGGATCGCCCTGCGCCTGGACGCCGAAGGCCGCCTGCCGGCGCAGGCCCGCAGCGGCTATGCGCAG
CTGTCGCTGGAGCAGCGGGAATGGGCGGTGGCGATGGCGCCGTCGAGCTGTCCGTCCCTGGCCAGCCTCGCC
CCGGGTCGCTCGCGTCGCTGGGGTCTGGCCGCCCAGGTCTATGCCCTGCGCCGCCCCGGCGACGGCGGCCTG
GGCGACAGCGCCGCCCTCGAGGACCTGCTGCGCAGCGCCGCGCGGCATGGCGCCGACGCGCTGGCGATCAGC
CCGCTGCACGCCCTGGCCGAGGCCAACGGACATGCCTACAGCCCCTACTCGCCGTCCAGCCGGCTGTTCTTC
AATGTCCTGCACGCCGCGCCAGCGACCATTCTCGGCGCGGCGGCGGTGGAACAGGCGATCCGTCGCGCCGGC
CTGGCCGCGGAGATGGCCCGCCTGGAGAGCCTGGAGCTGATCGACTGGACAGCGGCGGCGGACCTGCGCATG
CGCCTGCTGCGCCAACTCCACCGCGACTTCATCGAGCGCGCCAGTCCCTTGCGCCACGACCTCGCCGAATTC
CGCCGCGAAGCCGGCGAGGCGCTGCTGCACCACTGCCGCTTCGAGACCCTGCAGGCGCACCTGGGCGCCGGC
CCCGACTGGCGACGCTGGCCGGAGCCGCTGCGCCGCCCCGGCGAACCGGCGGTGGCCGCGTTCTGCGCCGAT
CACGCCGAGGAAGTGGACTTCCGCGCCTTCGGCCAGTGGCTGACCCAACGCTGCCTGCAACATGCCCAGCGC
CAGGCGCGCGAGGCCGGGATGGCCATCGGTCTGGTCGCCGACCTGGCGGTGGGCGCCGACGGCGGCGGCAGC
CAGGCCTGGTCGCGGCAGGAAGAGCTGCTCGCCGAAGTGAATGTCGGCGCGCCGCCGGACATCCTCAACCAG
TCCGGACAGGACTGGGGCGTTTCCGCGTTCAATCCCGAAGGCCTGCGCCGCCACGGCTACCGGGCATTCCGC
GAGATGCTGCGGGCCAACCTGGCCTGGCCCGGAGGGCTACGCATCGATCATGCGATGGGCCTGCAACGTCTC
TGGCTGATCCCGCGCGGCCAGCCGCCCCACGCCGGCGCCTACCTGCGCTACCCGCAGCGCGAGCTGCTGCGC
CTGCTGGCGCTGGAGGCCAGCCGCGCCTCGGCGCTGGTCATCGGCGAGGACCTCGGCACCGTGCCCGAAGGC
CTGCGCGAGGAACTGGCACGCCGCCAGGTGCTGGGTACCCGCGTGCTGCTCTTCGAGCGGCGCGGCGAACGC
TTCGTGCCCCCGGCGCAATGGCCGGCGGACGCCATGGCCACCACCAGCACCCACGACCTGCCGAGCCTGTCC
GGCTGGTGGCGGGGCCAGGACATCCACTGGCGCGGCCGCGCCGGACACCGCAGCGCCGAGGAATGCGCGGCC
GACCTGGAACTGCGCGCCGAGGAGCGCCGGGCGCTGGCCGCCAGCCTCGAACCGCCGGTCGATCCCGACCCC
GCCGCCGACGTGCCGCTGGACGCCTGCATCGGCTATGTCGGGGCAACCCCCGCGCCGTTGGTGCTACTGCCC
CTGGAGGACGCCCTGGGCAGCCTGGAGCAGCCGAACCTGCCCGGCCCCGGCGACGCCCACCCGAACTGGCGG
CGGCGCTGGCCGGAAAACGCCGCGCAGATGCTCGGAACGCCGCAGGTCGACCGGCGCCTGCGCCTGCTCGAA
CGCAGCCGCCGGGATGCCGAGGAGGCCGCCCATGATTGA
Translation:
MSDARLAELAAAVGLQLDWQDANGRSQRVDPEVQRGLLEALGYPAQSPQQIEQSLAALARLREDSANLGLLV
GECGQPLEQALGPAGTPGELVYEDGTRIALRLDAEGRLPAQARSGYAQLSLEQREWAVAMAPSSCPSLASLA
PGRSRRWGLAAQVYALRRPGDGGLGDSAALEDLLRSAARHGADALAISPLHALAEANGHAYSPYSPSSRLFF
NVLHAAPATILGAAAVEQAIRRAGLAAEMARLESLELIDWTAAADLRMRLLRQLHRDFIERASPLRHDLAEF
RREAGEALLHHCRFETLQAHLGAGPDWRRWPEPLRRPGEPAVAAFCADHAEEVDFRAFGQWLTQRCLQHAQR
QAREAGMAIGLVADLAVGADGGGSQAWSRQEELLAEVNVGAPPDILNQSGQDWGVSAFNPEGLRRHGYRAFR
EMLRANLAWPGGLRIDHAMGLQRLWLIPRGQPPHAGAYLRYPQRELLRLLALEASRASALVIGEDLGTVPEG
LREELARRQVLGTRVLLFERRGERFVPPAQWPADAMATTSTHDLPSLSGWWRGQDIHWRGRAGHRSAEECAA
DLELRAEERRALAASLEPPVDPDPAADVPLDACIGYVGATPAPLVLLPLEDALGSLEQPNLPGPGDAHPNWR
RRWPENAAQMLGTPQVDRRLRLLERSRRDAEEAAHD*
AnnotationID:318GeneID:308
AnnotatorUID: danlee
Modification Date/Time: 2006-03-13 12:12:51
Gene Name:
Confidence Code:3
GeneProduct:putative 4-alpha-glucanotransferase
Cell Localization:()
Synonyms:PA2163, malQ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1640,pfam02446
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56614.1| (AE016867) 4-alpha-glucanotransferase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 692

 Score =  662 bits (1708), Expect = 0.0
 Identities = 359/690 (52%), Positives = 449/690 (65%), Gaps = 11/690 (1%)

>gb|AAN69642.1|AE016598_3 (AE016789) 4-alpha-glucanotransferase [Pseudomonas putida KT2440]
          Length = 689

 Score =  647 bits (1669), Expect = 0.0
 Identities = 357/690 (51%), Positives = 437/690 (63%), Gaps = 14/690 (2%)






 
Structural Features:
COG1640, MalQ, 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
CD-Length = 520 residues,  98.8% aligned
Score =  477 bits (1229), Expect = 2e-135
Identities = 208/542 (38%), Positives = 271/542 (50%), Gaps = 34/542 (6%)

pfam02446, 4a_glucanotrans, 4-alpha-glucanotransferase.
CD-Length = 495 residues,  99.8% aligned
Score =  264 bits (677), Expect = 2e-71
Identities = 131/525 (24%), Positives = 213/525 (40%), Gaps = 36/525 (6%)
 






   
Genomic Context:






   
Comment:


















    ReferenceID:619




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17761




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32566




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:308_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:308
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
500
                           PA2163_tr
                           translation of PA2163
                           684
                           99.12
                           99.41
                           0
                           3536.0
     

     
     
25343
                           gb|AAG05551.1|AE004643_4
                           (AE004643) hypothetical protein PA2163 [Pseudomonas aeruginosa PAO1]
                           684
                           99.12
                           99.41
                           0
                           3536.0
     

     
     
25344
                           gb|AAO56614.1|
                           (AE016867) 4-alpha-glucanotransferase [Pseudomonas syringae pv. tomato str. DC3000]
                           695
                           51.94
                           64.74
                           14
                           1720.0
     

     
     
25345
                           gb|AAN69642.1|AE016598_3
                           (AE016789) 4-alpha-glucanotransferase [Pseudomonas putida KT2440]
                           697
                           51.64
                           62.98
                           21
                           1688.0
     

     
     
25347
                           emb|CAE38190.1|
                           (BX640431) 4-alpha-glucanotransferase [Bordetella parapertussis]
                           704
                           44.88
                           56.25
                           52
                           1320.0
     

     






      

          
GC ORFID: 43310How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2163Glimmer Score: 

          
Start: 1697123Stop: 1695069

          
Length: 2055


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2163 translation of PA2163Homolog Bit Score 1366.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7220 (ORF: BLASTX 662.0), t_PA2163 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTGACGCACGCCTGGCCGAACTGGCCGCCGCCGTGGGCCTGCAACTCGACTGGCAGGACGCCAACGGA 
CGGTCGCAGCGGGTCGACCCGGAGGTCCAGCGCGGCCTGCTGGAAGCACTCGGCTATCCGGCGCAGAGTCCG 
CAACAGATCGAACAGAGCCTGGCCGCGCTGGCCCGGCTGCGCGAGGACAGCGCCAACCTCGGACTGCTGGTC 
GGCGAATGCGGCCAGCCGCTGGAGCAAGCGCTCGGCCCCGCCGGCACCCCGGGCGAACTGGTCTACGAGGAC 
GGCACGCGGATCGCCCTGCGCCTGGACGCCGAAGGCCGCCTGCCGGCGCAGGCCCGCAGCGGCTATGCGCAG 
CTGTCGCTGGAGCAGCGGGAATGGGCGGTGGCGATGGCGCCGTCGAGCTGTCCGTCCCTGGCCAGCCTCGCC 
CCGGGTCGCTCGCGTCGCTGGGGTCTGGCCGCCCAGGTCTATGCCCTGCGCCGCCCCGGCGACGGCGGCCTG 
GGCGACAGCGCCGCCCTCGAGGACCTGCTGCGCAGCGCCGCGCGGCATGGCGCCGACGCGCTGGCGATCAGC 
CCGCTGCACGCCCTGGCCGAGGCCAACGGACATGCCTACAGCCCCTACTCGCCGTCCAGCCGGCTGTTCTTC 
AATGTCCTGCACGCCGCGCCAGCGACCATTCTCGGCGCGGCGGCGGTGGAACAGGCGATCCGTCGCGCCGGC 
CTGGCCGCGGAGATGGCCCGCCTGGAGAGCCTGGAGCTGATCGACTGGACAGCGGCGGCGGACCTGCGCATG 
CGCCTGCTGCGCCAACTCCACCGCGACTTCATCGAGCGCGCCAGTCCCTTGCGCCACGACCTCGCCGAATTC 
CGCCGCGAAGCCGGCGAGGCGCTGCTGCACCACTGCCGCTTCGAGACCCTGCAGGCGCACCTGGGCGCCGGC 
CCCGACTGGCGACGCTGGCCGGAGCCGCTGCGCCGCCCCGGCGAACCGGCGGTGGCCGCGTTCTGCGCCGAT 
CACGCCGAGGAAGTGGACTTCCGCGCCTTCGGCCAGTGGCTGACCCAACGCTGCCTGCAACATGCCCAGCGC 
CAGGCGCGCGAGGCCGGGATGGCCATCGGTCTGGTCGCCGACCTGGCGGTGGGCGCCGACGGCGGCGGCAGC 
CAGGCCTGGTCGCGGCAGGAAGAGCTGCTCGCCGAAGTGAATGTCGGCGCGCCGCCGGACATCCTCAACCAG 
TCCGGACAGGACTGGGGCGTTTCCGCGTTCAATCCCGAAGGCCTGCGCCGCCACGGCTACCGGGCATTCCGC 
GAGATGCTGCGGGCCAACCTGGCCTGGCCCGGAGGGCTACGCATCGATCATGCGATGGGCCTGCAACGTCTC 
TGGCTGATCCCGCGCGGCCAGCCGCCCCACGCCGGCGCCTACCTGCGCTACCCGCAGCGCGAGCTGCTGCGC 
CTGCTGGCGCTGGAGGCCAGCCGCGCCTCGGCGCTGGTCATCGGCGAGGACCTCGGCACCGTGCCCGAAGGC 
CTGCGCGAGGAACTGGCACGCCGCCAGGTGCTGGGTACCCGCGTGCTGCTCTTCGAGCGGCGCGGCGAACGC 
TTCGTGCCCCCGGCGCAATGGCCGGCGGACGCCATGGCCACCACCAGCACCCACGACCTGCCGAGCCTGTCC 
GGCTGGTGGCGGGGCCAGGACATCCACTGGCGCGGCCGCGCCGGACACCGCAGCGCCGAGGAATGCGCGGCC 
GACCTGGAACTGCGCGCCGAGGAGCGCCGGGCGCTGGCCGCCAGCCTCGAACCGCCGGTCGATCCCGACCCC 
GCCGCCGACGTGCCGCTGGACGCCTGCATCGGCTATGTCGGGGCAACCCCCGCGCCGTTGGTGCTACTGCCC 
CTGGAGGACGCCCTGGGCAGCCTGGAGCAGCCGAACCTGCCCGGCCCCGGCGACGCCCACCCGAACTGGCGG 
CGGCGCTGGCCGGAAAACGCCGCGCAGATGCTCGGAACGCCGCAGGTCGACCGGCGCCTGCGCCTGCTCGAA 
CGCAGCCGCCGGGATGCCGAGGAGGCCGCCCATGATTGA