ViewGene
Locus Name:
GeneID:
Location:

GeneID:3079
TrivialName: PA14_13690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13690
PAO1 Ortholog Locus:PA3882
Sequence Length:750
Protein Length:249
Start: 1176992
Stop: 1176243
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07269.1|AE004805_7 (AE004805) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 246/249 (98%), Positives = 248/249 (99%)
Sequence:
ATGGAAACCCGCCGTCTGTTCGACCAGGGCTCCGCTGCCTACGCCAGCGCCCGCCCGCGTTATCCCGATGCG
CTCTACCGCCATCTCGCCGGGCTCTGCGGCCAGCGCCGGCGCGCCTGGGACTGCGCCACCGGTACCGGCCAG
GCCGCGCTCGGCCTGGCGCAGCACTTCGGCGAAGTCCTCGCCAGCGACACCAGCGCGCAGCAGATCGAACAC
GCCGTTATCCATCCGGGTATCCGCTACAGCGTGCAGGACGCCGAAGCCACCGACTATCCCGACGCCGCCTTC
GACCTGGTCTGCGTAGCCCAGGCCTGGCACTGGTTCGACCACTCGCGCTTCAACCGCGAGCTGCTGCGCGTG
CTGCGTCCCGGCGGCGTGTTCGCCGCCTGGGGCTACGGCTGGTTCAGCATCGACGCGCAGATCGATGCCGCC
ATCGACGAGGAATACCTGCGCCCGATCGGCCCGTACTGGGCGCAACAGAACCGCCTGCTGTGGAACGCCTAC
CGGGATGTCGAGCTGCCGCTGGGCGAACTCCCCGCGCCGGCCTTCGTCATCGAGCAACAATGGAGCCTGGCC
CGGTTGTTCGACTACATGGCCACCTGGTCGGCCAGCCGCCTGTGCCGCGAGGCGCAGGGCAACGCTTTCGTG
CGCCAGGCCCTGCAACGGGTCGCCGCGCTCTGGGGCGAGCCGACCTCGACACGCAGGGTTCGCATGCCGCTG
GCGCTGCGGATCGCGCGCAAGGACGCCTGA
Translation:
METRRLFDQGSAAYASARPRYPDALYRHLAGLCGQRRRAWDCATGTGQAALGLAQHFGEVLASDTSAQQIEH
AVIHPGIRYSVQDAEATDYPDAAFDLVCVAQAWHWFDHSRFNRELLRVLRPGGVFAAWGYGWFSIDAQIDAA
IDEEYLRPIGPYWAQQNRLLWNAYRDVELPLGELPAPAFVIEQQWSLARLFDYMATWSASRLCREAQGNAFV
RQALQRVAALWGEPTSTRRVRMPLALRIARKDA*
AnnotationID:3087GeneID:3079
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 12:12:43
Gene Name:
Confidence Code:3
GeneProduct:putative methyltransferase
Cell Localization:()
Synonyms:PA3882
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG3010
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
KOG3010, Methyltransferase 
CD-Length = 261 residues,  98.9% aligned
Score =  140 bits (355), Expect = 2e-34
Identities = 76/258 (29%), Positives = 115/258 (44%), Gaps = 15/258 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6161




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23303




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31683




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3079_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3079
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4963
                           PA3882_tr
                           translation of PA3882
                           249
                           98.79
                           99.59
                           0
                           1321.0
     

     
     
140073
                           gb|AAG07269.1|AE004805_7
                           (AE004805) hypothetical protein PA3882 [Pseudomonas aeruginosa PAO1]
                           249
                           98.79
                           99.59
                           0
                           1321.0
     

     
     
140074
                           gb|AAR36186.1|
                           (AE017217) conserved hypothetical protein [Geobacter sulfurreducens PCA]
                           251
                           44.22
                           54.58
                           3
                           505.0
     

     
     
140075
                           gb|AAQ61135.1|
                           (AE016922) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           263
                           39.92
                           54.37
                           21
                           513.0
     

     
     
140076
                           dbj|BAC81977.1|
                           (AB063332) orf2 [Delftia acidovorans]
                           252
                           38.09
                           51.58
                           3
                           434.0
     

     






      

          
GC ORFID: 46081How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3882Glimmer Score: 

          
Start: 3776946Stop: 3777695

          
Length: 750


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3882 translation of PA3882Homolog Bit Score 513.0

          
Other Homologs:  t_PA3882 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAACCCGCCGTCTGTTCGACCAGGGCTCCGCTGCCTACGCCAGCGCCCGCCCGCGTTATCCCGATGCG 
CTCTACCGCCATCTCGCCGGGCTCTGCGGCCAGCGCCGGCGCGCCTGGGACTGCGCCACCGGTACCGGCCAG 
GCCGCGCTCGGCCTGGCGCAGCACTTCGGCGAAGTCCTCGCCAGCGACACCAGCGCGCAGCAGATCGAACAC 
GCCGTTATCCATCCGGGTATCCGCTACAGCGTGCAGGACGCCGAAGCCACCGACTATCCCGACGCCGCCTTC 
GACCTGGTCTGCGTAGCCCAGGCCTGGCACTGGTTCGACCACTCGCGCTTCAACCGCGAGCTGCTGCGCGTG 
CTGCGTCCCGGCGGCGTGTTCGCCGCCTGGGGCTACGGCTGGTTCAGCATCGACGCGCAGATCGATGCCGCC 
ATCGACGAGGAATACCTGCGCCCGATCGGCCCGTACTGGGCGCAACAGAACCGCCTGCTGTGGAACGCCTAC 
CGGGATGTCGAGCTGCCGCTGGGCGAACTCCCCGCGCCGGCCTTCGTCATCGAGCAACAATGGAGCCTGGCC 
CGGTTGTTCGACTACATGGCCACCTGGTCGGCCAGCCGCCTGTGCCGCGAGGCGCAGGGCAACGCTTTCGTG 
CGCCAGGCCCTGCAACGGGTCGCCGCGCTCTGGGGCGAGCCGACCTCGACACGCAGGGTTCGCATGCCGCTG 
GCGCTGCGGATCGCGCGCAAGGACGCCTGA