ViewGene
Locus Name:
GeneID:
Location:

GeneID:3078
TrivialName: PA14_22040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22040
PAO1 Ortholog Locus:PA3243
Sequence Length:792
Protein Length:263
Start: 1916464
Stop: 1915673
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06631.1|AE004747_4 (AE004747) cell division inhibitor MinC [Pseudomonas aeruginosa PAO1]
Identities = 262/263 (99%), Positives = 263/263 (100%)
Sequence:
ATGAGCCAAGCCGACCTCCTCGATCAAGACCCCGTATTCCAGCTCAAGGGCAGCATGCTCGCGGTGACCATC
CTCGAACTGGCGCACAACGACCTGGCGAGGCTCGAACGGCAACTCGCCGACAAGGTGGCGCAAGCGCCCAAC
TTCTTCCGCGACACCCCCCTGGTCATGGCCCTCGACAAGCTGCCCGAAGGCGAAGGCCGCCTTGACCTGCCG
GCGCTCCTCGAGGTCTGTCGCCGCCACGGCCTGCGCACCCTGGCGATCCGCGCCGGGCGCGAGGAGGACATC
GCCGCCGCCCAGGCCCTGGACCTGCCGGTGCTGCCGCCCTCGGGCGCCCGCGAACGACCGCTGGACATCAAG
GACAGCGCCCCGCGCAAGCCTGCCGAAGAGCCCAGCCCGAGCGCCGGTGAAGCCAGGCCCGAGCCGGCCAAG
GCGGAAGAGAAGCCCGCCGACCCCGTCAGCCGCCCGACCAAGGTGGTGAAGACTCCGGTGCGCGGCGGCATG
CAGATCTACGCCGCCGGCGGCGACCTGATCGTGCTGGCCGCGGTCAGTCCCGGCGCGGAACTTCTCGCCGAC
GGAAACATCCATGTGTACGGCCCGATGCGCGGACGCGCACTGGCCGGCGTGAAAGGCGACGCCACGGCGCGA
ATCTTCTGCCAGCAGCTGGCCGCCGAACTGGTCTCCATCGCCGGTAACTACAAGGTCGCGGAGGACCTGCGA
CGCAGCCCGCAGTGGGGCAAGGCAGTGCACGTCAGCCTGTCGGGTGACGTGTTGAACATCACCCGCCTTTAA
Translation:
MSQADLLDQDPVFQLKGSMLAVTILELAHNDLARLERQLADKVAQAPNFFRDTPLVMALDKLPEGEGRLDLP
ALLEVCRRHGLRTLAIRAGREEDIAAAQALDLPVLPPSGARERPLDIKDSAPRKPAEEPSPSAGEARPEPAK
AEEKPADPVSRPTKVVKTPVRGGMQIYAAGGDLIVLAAVSPGAELLADGNIHVYGPMRGRALAGVKGDATAR
IFCQQLAAELVSIAGNYKVAEDLRRSPQWGKAVHVSLSGDVLNITRL*
AnnotationID:3086GeneID:3078
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 14:02:22
Gene Name:minC
Confidence Code:2
GeneProduct:cell division inhibitor MinC
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:septum site-determining protein MinC
Functional Category Confidence Code:5
COGs:pfam03775,pfam05209,COG0850
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67354.1|AE016361_8 (AE016780) septum site-determining protein MinC [Pseudomonas putida
           KT2440]
          Length = 275

 Score =  346 bits (887), Expect = 9e-95
 Identities = 180/263 (68%), Positives = 203/263 (77%), Gaps = 13/263 (4%)

>gb|AAO57339.1| (AE016870) septum site-determining protein MinC [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 246

 Score =  340 bits (873), Expect = 4e-93
 Identities = 176/263 (66%), Positives = 206/263 (78%), Gaps = 17/263 (6%)








 
Structural Features:
pfam03775, MinC_C, Septum formation inhibitor MinC, C-terminal domain.
CD-Length = 109 residues, 100.0% aligned
Score =  147 bits (372), Expect = 2e-36
Identities = 62/110 (56%), Positives = 78/110 (70%), Gaps = 1/110 (0%)

pfam05209, MinC_N, Septum formation inhibitor MinC, N-terminal domain. 
CD-Length = 95 residues,  97.9% aligned
Score =  101 bits (253), Expect = 1e-22
Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 7/100 (7%)

COG0850, MinC, Septum formation inhibitor 
[Cell division and chromosome partitioning]
CD-Length = 219 residues,  99.1% aligned
Score =  203 bits (518), Expect = 2e-53
Identities = 105/251 (41%), Positives = 141/251 (56%), Gaps = 34/251 (13%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6159




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23301




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32299




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3078_cdd.html


    		




 
URL:

















    ReferenceID:33981




  
Author/Investigator(s):
        de Boer PA, Crossley RE, Rothfield LI.





  
Title:
        Roles of MinC and MinD in the site-specific septation block mediated by the MinCDE system of Escherichia coli.




  
PubMed:
        1729224


MedLine:
        




    
Source:
J Bacteriol. 1992 Jan;174(1):63-70.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1729224

















    ReferenceID:33982




  
Author/Investigator(s):
        de Boer PA, Crossley RE, Rothfield LI.





  
Title:
        Central role for the Escherichia coli minC gene product in two different cell division-inhibition systems.




  
PubMed:
        2137246


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 1990 Feb;87(3):1129-33.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2137246

















    ReferenceID:33983




  
Author/Investigator(s):
        de Boer PA, Crossley RE, Rothfield LI.





  
Title:
        Central role for the Escherichia coli minC gene product in two different cell division-inhibition systems.




  
PubMed:
        2137246


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 1990 Feb;87(3):1129-33.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2137246









           
Homologs By Global Alignment 

           

       



     
Gene ID:3078
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4962
                           PA3243_tr
                           translation of PA3243
                           263
                           99.61
                           99.99
                           0
                           1322.0
     

     
     
140068
                           gb|AAG06631.1|AE004747_4
                           (AE004747) cell division inhibitor MinC [Pseudomonas aeruginosa PAO1]
                           263
                           99.61
                           99.99
                           0
                           1322.0
     

     
     
140070
                           gb|AAO57339.1|
                           (AE016870) septum site-determining protein MinC [Pseudomonas syringae pv. tomato str. DC3000]
                           263
                           66.92
                           78.32
                           17
                           884.0
     

     
     
140069
                           gb|AAN67354.1|AE016361_8
                           (AE016780) septum site-determining protein MinC [Pseudomonas putida KT2440]
                           288
                           62.50
                           70.48
                           38
                           896.0
     

     
     
140071
                           emb|CAD85742.1|
                           (BX321862) putative cell division inhibitor MinC [Nitrosomonas europaea ATCC 19718]
                           264
                           39.77
                           55.30
                           24
                           436.0
     

     






      

          
GC ORFID: 46080How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3243Glimmer Score: 

          
Start: 3037467Stop: 3038258

          
Length: 792


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3243 translation of PA3243Homolog Bit Score 513.0

          
Other Homologs:  t_PA3243 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAAGCCGACCTCCTCGATCAAGACCCCGTATTCCAGCTCAAGGGCAGCATGCTCGCGGTGACCATC 
CTCGAACTGGCGCACAACGACCTGGCGAGGCTCGAACGGCAACTCGCCGACAAGGTGGCGCAAGCGCCCAAC 
TTCTTCCGCGACACCCCCCTGGTCATGGCCCTCGACAAGCTGCCCGAAGGCGAAGGCCGCCTTGACCTGCCG 
GCGCTCCTCGAGGTCTGTCGCCGCCACGGCCTGCGCACCCTGGCGATCCGCGCCGGGCGCGAGGAGGACATC 
GCCGCCGCCCAGGCCCTGGACCTGCCGGTGCTGCCGCCCTCGGGCGCCCGCGAACGACCGCTGGACATCAAG 
GACAGCGCCCCGCGCAAGCCTGCCGAAGAGCCCAGCCCGAGCGCCGGTGAAGCCAGGCCCGAGCCGGCCAAG 
GCGGAAGAGAAGCCCGCCGACCCCGTCAGCCGCCCGACCAAGGTGGTGAAGACTCCGGTGCGCGGCGGCATG 
CAGATCTACGCCGCCGGCGGCGACCTGATCGTGCTGGCCGCGGTCAGTCCCGGCGCGGAACTTCTCGCCGAC 
GGAAACATCCATGTGTACGGCCCGATGCGCGGACGCGCACTGGCCGGCGTGAAAGGCGACGCCACGGCGCGA 
ATCTTCTGCCAGCAGCTGGCCGCCGAACTGGTCTCCATCGCCGGTAACTACAAGGTCGCGGAGGACCTGCGA 
CGCAGCCCGCAGTGGGGCAAGGCAGTGCACGTCAGCCTGTCGGGTGACGTGTTGAACATCACCCGCCTTTAA