ViewGene
Locus Name:
GeneID:
Location:

GeneID:3077
TrivialName: PA14_26560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26560
PAO1 Ortholog Locus:PA2900
Sequence Length:810
Protein Length:269
Start: 2313950
Stop: 2314759
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06288.1|AE004716_6 (AE004716) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 269/269 (100%), Positives = 269/269 (100%)
Sequence:
ATGCCGGGCAAAGCGACTCTCTTCGCCACCCTGCTGGCCTGCGCCGCGCTGGCTGGCTGCGCCGACCACAAG
CTCAGCGAACAGTCGCTGGCCAAGGCGCAGAGCGAGTTCGACCAGGTCAAGGAAGATTCCGACGTGCTCCGC
GCGGCGCCCAAGGATGTGATTCGCGCCGGCGAATCGCTGGCCCGCGCCGAACGCCTGTCCAGCTACTGGGGC
AGCAGCAGCGACGTGATCCAGTATGCCTACCTGAGCCAGCGCTACAGCGAGATCGCTCGCCAGCACGCCTTG
CTCAACCTCAACCAGGAGCGCCTGACCCGCCTGCAACTGGAGCGCGAGCGCCTGCAACTGGCCCTGCGCGAA
GCCAAGCTGCTCAGCGTGCAGGAGCAGGGCCAGCGCCTGAGCGAGGAGATCGCCAGTCTCAGCACCGAGGAA
ACCGAGCGTGGCCTGGTGCTCACCCTTGGCGACGTGCTGTTCGACTTCAACCGCGCCGAACTCAAGCCGGCG
GCCAACCGCACCGCGCTGAAGCTGGTGCAGTTCCTCCAGCTCAATCCGCGGCGGGTGATCCGCATCGAAGGC
TATACCGACAGCGTCGGCGACAGGCAGGCCAACCTCGACCTGTCGCGCGAGCGCGCCCAGGCGGTGGCCGAC
GTGCTCGCCGATCTCGGCGTGGATCCCGCGCGCATGCAGGTGGTCGGCTACGGCGAAGCCTTCCCGGTCACC
GACAACGCCTCCAACCGGGGGCGGGCGCAGAACCGCCGGGTGGAGATCGTCTTCTCCAACGACAAGGGCCAG
CTCAGCGCGCCGCGCTGA
Translation:
MPGKATLFATLLACAALAGCADHKLSEQSLAKAQSEFDQVKEDSDVLRAAPKDVIRAGESLARAERLSSYWG
SSSDVIQYAYLSQRYSEIARQHALLNLNQERLTRLQLERERLQLALREAKLLSVQEQGQRLSEEIASLSTEE
TERGLVLTLGDVLFDFNRAELKPAANRTALKLVQFLQLNPRRVIRIEGYTDSVGDRQANLDLSRERAQAVAD
VLADLGVDPARMQVVGYGEAFPVTDNASNRGRAQNRRVEIVFSNDKGQLSAPR*
AnnotationID:3085GeneID:3077
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 12:12:01
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane protein precursor
Cell Localization:()
Synonyms:PA2900
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00691
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55705.1| (AE016863) ompA family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 271

 Score =  346 bits (888), Expect = 7e-95
 Identities = 178/259 (68%), Positives = 215/259 (83%)

>gb|AAN69779.1|AE016614_5 (AE016789) OmpA family protein [Pseudomonas putida KT2440]
          Length = 270

 Score =  330 bits (845), Expect = 7e-90
 Identities = 174/261 (66%), Positives = 210/261 (80%), Gaps = 1/261 (0%)








 
Structural Features:
pfam00691, OmpA, OmpA family. 
CD-Length = 96 residues, 100.0% aligned
Score = 93.8 bits (233), Expect = 2e-20
Identities = 40/96 (41%), Positives = 54/96 (56%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6157




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23299




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36154




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3077_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3077
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4961
                           PA2900_tr
                           translation of PA2900
                           269
                           99.99
                           99.99
                           0
                           1321.0
     

     
     
140065
                           gb|AAG06288.1|AE004716_6
                           (AE004716) probable outer membrane protein precursor [Pseudomonas aeruginosa PAO1]
                           269
                           99.99
                           99.99
                           0
                           1321.0
     

     
     
140066
                           gb|AAO55705.1|
                           (AE016863) ompA family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           272
                           65.80
                           80.14
                           4
                           883.0
     

     
     
140067
                           gb|AAN69779.1|AE016614_5
                           (AE016789) OmpA family protein [Pseudomonas putida KT2440]
                           271
                           64.94
                           78.59
                           3
                           841.0
     

     






      

          
GC ORFID: 46079How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2900Glimmer Score: 

          
Start: 2639976Stop: 2639167

          
Length: 810


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2900 translation of PA2900Homolog Bit Score 513.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene984 (ORF: BLASTX 348.0), t_PA2900 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGGGCAAAGCGACTCTCTTCGCCACCCTGCTGGCCTGCGCCGCGCTGGCTGGCTGCGCCGACCACAAG 
CTCAGCGAACAGTCGCTGGCCAAGGCGCAGAGCGAGTTCGACCAGGTCAAGGAAGATTCCGACGTGCTCCGC 
GCGGCGCCCAAGGATGTGATTCGCGCCGGCGAATCGCTGGCCCGCGCCGAACGCCTGTCCAGCTACTGGGGC 
AGCAGCAGCGACGTGATCCAGTATGCCTACCTGAGCCAGCGCTACAGCGAGATCGCTCGCCAGCACGCCTTG 
CTCAACCTCAACCAGGAGCGCCTGACCCGCCTGCAACTGGAGCGCGAGCGCCTGCAACTGGCCCTGCGCGAA 
GCCAAGCTGCTCAGCGTGCAGGAGCAGGGCCAGCGCCTGAGCGAGGAGATCGCCAGTCTCAGCACCGAGGAA 
ACCGAGCGTGGCCTGGTGCTCACCCTTGGCGACGTGCTGTTCGACTTCAACCGCGCCGAACTCAAGCCGGCG 
GCCAACCGCACCGCGCTGAAGCTGGTGCAGTTCCTCCAGCTCAATCCGCGGCGGGTGATCCGCATCGAAGGC 
TATACCGACAGCGTCGGCGACAGGCAGGCCAACCTCGACCTGTCGCGCGAGCGCGCCCAGGCGGTGGCCGAC 
GTGCTCGCCGATCTCGGCGTGGATCCCGCGCGCATGCAGGTGGTCGGCTACGGCGAAGCCTTCCCGGTCACC 
GACAACGCCTCCAACCGGGGGCGGGCGCAGAACCGCCGGGTGGAGATCGTCTTCTCCAACGACAAGGGCCAG 
CTCAGCGCGCCGCGCTGA