ViewGene
Locus Name:
GeneID:
Location:

GeneID:3076
TrivialName: PA14_47060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47060
PAO1 Ortholog Locus:PA1330
Sequence Length:780
Protein Length:259
Start: 4192570
Stop: 4191791
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04719.1|AE004562_6 (AE004562) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 256/259 (98%), Positives = 257/259 (99%)
Sequence:
ATGAAACAGAAGCGAATCCTGGTGACCGGGGCCGGCAGCGGCTTCGGTCGGGAAGTGGCGTTGCGCCTGGCC
GCCCGCGGCCATCGGACGATCGCCGGCGTGCGCGGCGCCGGGCAGGCCGCCGACCTGCGCGAAGAGGCCGGG
CGGCGTGGCGTCCCGCTGCGGGTGGAAACCCTCGACATCACCGTCGCCGCCGATCGCGAACGCGCCTGGGAA
TCGGATATCGACGTGCTGCTGAACAACGCCGGCAGCGCCGAGGCCGGGGCCAGCGCGGAGATCCCGCTGGAA
CTGGTGCGCGCGCTGTTCGAGACCAACGTGTTCGCCAACCTGGAACTGACCCAGGGTTTCGTCCGGCGCATG
GTCGAGCAGAAGCGTGGCGGCAAGGTGCTCTTCGTGTCGTCCATCGCCGGCCTGATCACCGGACCCTATACC
GGTCCCTACTGCGCCTCCAAGCATGCCCTGGAGGCCTTCGCCGAGGCCCTGCATGCCGAACTGAAGCCGTTC
GGCATCCAGGTCGGCACCATCAATCCCGGCCCGTACCAGACCGGCTTCAACGATCGCATGATGGAAACCTGG
AAACGCTGGTACGACCCGCAGCGCCACTTCACCGACCACAGCGGCGTGCGCTTTCCCTTCGAGCAGTACGAT
CCGGAGGAAATGATCGCGCGGATGGTCGAGCTGGCCGAGGCCGACGAAGGACCGTTCCGCACCCTGTTGCCG
GAAGCTTTCGTCGAGGTGGTGAAGGACGAGCAGGTGCAGGCCTGGCAGCGCCGCCTGTAG
Translation:
MKQKRILVTGAGSGFGREVALRLAARGHRTIAGVRGAGQAADLREEAGRRGVPLRVETLDITVAADRERAWE
SDIDVLLNNAGSAEAGASAEIPLELVRALFETNVFANLELTQGFVRRMVEQKRGGKVLFVSSIAGLITGPYT
GPYCASKHALEAFAEALHAELKPFGIQVGTINPGPYQTGFNDRMMETWKRWYDPQRHFTDHSGVRFPFEQYD
PEEMIARMVELAEADEGPFRTLLPEAFVEVVKDEQVQAWQRRL*
AnnotationID:3084GeneID:3076
AnnotatorUID: diggins
Modification Date/Time: 2005-05-26 18:06:01
Gene Name:
Confidence Code:3
GeneProduct:putative short chain dehydrogenase
Cell Localization:()
Synonyms:PA1330
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00106
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM04737.1| (AE010801) short chain dehydrogenase [Methanosarcina acetivorans
           str. C2A] [Methanosarcina acetivorans C2A]
          Length = 269

 Score =  236 bits (602), Expect = 1e-61
 Identities = 123/257 (47%), Positives = 169/257 (65%), Gaps = 2/257 (0%)






 
Structural Features:
pfam00106, adh_short, short chain dehydrogenase. 
CD-Length = 247 residues,  96.0% aligned
Score =  143 bits (362), Expect = 2e-35
Identities = 73/241 (30%), Positives = 105/241 (43%), Gaps = 13/241 (5%)








   
Genomic Context:






   
Comment:


















    ReferenceID:6155




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23297




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37464




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3076_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3076
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4960
                           PA1330_tr
                           translation of PA1330
                           259
                           98.84
                           99.22
                           0
                           1321.0
     

     
     
140061
                           gb|AAG04719.1|AE004562_6
                           (AE004562) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
                           259
                           98.84
                           99.22
                           0
                           1321.0
     

     
     
140062
                           gb|AAM04737.1|
                           (AE010801) short chain dehydrogenase [Methanosarcina acetivorans str. C2A] [Methanosarcina acetivorans C2A]
                           275
                           44.72
                           62.54
                           22
                           608.0
     

     
     
140063
                           emb|CAB07971.1|
                           (Z93941) YuxA [Bacillus subtilis]
                           297
                           31.64
                           46.46
                           55
                           322.0
     

     
     
140064
                           emb|CAB15287.1|
                           (Z99120) yusZ [Bacillus subtilis subsp. subtilis str. 168]
                           297
                           31.64
                           46.46
                           55
                           322.0
     

     






      

          
GC ORFID: 46078How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1330Glimmer Score: 

          
Start: 761339Stop: 762118

          
Length: 780


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1330 translation of PA1330Homolog Bit Score 513.0

          
Other Homologs:  t_PA1330 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACAGAAGCGAATCCTGGTGACCGGGGCCGGCAGCGGCTTCGGTCGGGAAGTGGCGTTGCGCCTGGCC 
GCCCGCGGCCATCGGACGATCGCCGGCGTGCGCGGCGCCGGGCAGGCCGCCGACCTGCGCGAAGAGGCCGGG 
CGGCGTGGCGTCCCGCTGCGGGTGGAAACCCTCGACATCACCGTCGCCGCCGATCGCGAACGCGCCTGGGAA 
TCGGATATCGACGTGCTGCTGAACAACGCCGGCAGCGCCGAGGCCGGGGCCAGCGCGGAGATCCCGCTGGAA 
CTGGTGCGCGCGCTGTTCGAGACCAACGTGTTCGCCAACCTGGAACTGACCCAGGGTTTCGTCCGGCGCATG 
GTCGAGCAGAAGCGTGGCGGCAAGGTGCTCTTCGTGTCGTCCATCGCCGGCCTGATCACCGGACCCTATACC 
GGTCCCTACTGCGCCTCCAAGCATGCCCTGGAGGCCTTCGCCGAGGCCCTGCATGCCGAACTGAAGCCGTTC 
GGCATCCAGGTCGGCACCATCAATCCCGGCCCGTACCAGACCGGCTTCAACGATCGCATGATGGAAACCTGG 
AAACGCTGGTACGACCCGCAGCGCCACTTCACCGACCACAGCGGCGTGCGCTTTCCCTTCGAGCAGTACGAT 
CCGGAGGAAATGATCGCGCGGATGGTCGAGCTGGCCGAGGCCGACGAAGGACCGTTCCGCACCCTGTTGCCG 
GAAGCTTTCGTCGAGGTGGTGAAGGACGAGCAGGTGCAGGCCTGGCAGCGCCGCCTGTAG