ViewGene

Locus Name:
GeneID:
Location:

GeneID:3075
TrivialName: PA14_73350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73350
PAO1 Ortholog Locus:PA5563
Sequence Length:789
Protein Length:262
Start: 6529898
Stop: 6529110
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08948.1|AE004968_2 (AE004968) chromosome partitioning protein Soj [Pseudomonas aeruginosa PAO1]
Identities = 262/262 (100%), Positives = 262/262 (100%)
Sequence:
ATGGCTAAGGTATTCGCGATCGCCAACCAGAAAGGCGGTGTCGGCAAGACCACGACCTGTATCAACCTCGCG
GCCTCCCTCGTGGCGACCAAGCGCCGCGTCCTCCTGCTGGACCTGGATCCCCAGGGCAACGCCACCACCGGC
AGCGGCATCGACAAGCACAACCTGGAGCACTCCATCTACGACGTGCTCACCGGCGAGTGCAACCTCGCCGAG
GCCATGCAGTTCTCCGAACACGGCGGCTACCAGTTGTTGCCGGCCAACCGCGACCTGACCGCCGCGGAAGTG
GTGCTGCTGGAAATGGACATGAAGGAAAATCGCCTGCGCAACGCGCTGGCGCCGATCCGCGAGAACTACGAC
TACATCCTCATCGACTGCCCGCCGTCGCTGTCAATGCTCACCGTCAACGCGCTGACCGCCGCCGACGGCGTG
ATCATCCCCATGCAGTGCGAGTACTACGCGCTGGAGGGGCTGACCGACCTGATGAACAGCATCCAGCGCATC
GGCCAGTTGCTCAACCCGACGCTGAAGATCGAGGGTCTGTTGCGGACCATGTACGATCCGCGCATCAGCCTG
ACCAACGATGTCTCCGCGCAGTTGCAGGAGCATTTCGGCGACACCCTCTACAGCACCGTCATCCCGCGTAAC
GTGCGCCTCGCCGAAGCCCCCAGCTTCGGCATGCCGGCGCTGGTTTACGACAAGCAATCCCGCGGCGCCATC
GCCTACCTGGCGCTGGCCGGCGAGCTGGTCCGCCGCCAGCGCGCCAAAGGCCGCGCCGCAACCGCATAA
Translation:
MAKVFAIANQKGGVGKTTTCINLAASLVATKRRVLLLDLDPQGNATTGSGIDKHNLEHSIYDVLTGECNLAE
AMQFSEHGGYQLLPANRDLTAAEVVLLEMDMKENRLRNALAPIRENYDYILIDCPPSLSMLTVNALTAADGV
IIPMQCEYYALEGLTDLMNSIQRIGQLLNPTLKIEGLLRTMYDPRISLTNDVSAQLQEHFGDTLYSTVIPRN
VRLAEAPSFGMPALVYDKQSRGAIAYLALAGELVRRQRAKGRAATA*
AnnotationID:3083GeneID:3075
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 08:08:05
Gene Name:soj
Confidence Code:2
GeneProduct:chromosome partitioning protein
Cell Localization:()
Synonyms:parA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1192,pfam00991
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO59021.1| (AE016876) ParA family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 263

 Score =  447 bits (1149), Expect = e-125
 Identities = 221/260 (85%), Positives = 242/260 (93%)

>gb|AAN65636.1|AE016190_2 (AE016774) ParA family protein [Pseudomonas putida KT2440]
          Length = 263

 Score =  442 bits (1136), Expect = e-123
 Identities = 218/260 (83%), Positives = 240/260 (92%)

>gb|AAN57715.1|AE015907_13 (AE015907) ParA family protein [Shewanella oneidensis MR-1]
          Length = 262

 Score =  337 bits (863), Expect = 5e-92
 Identities = 164/252 (65%), Positives = 206/252 (81%)
Structural Features:
COG1192, Soj, ATPases involved in chromosome partitioning 
[Cell division and chromosome partitioning]
CD-Length = 259 residues, 100.0% aligned
Score =  234 bits (598), Expect = 7e-63
Identities = 107/260 (41%), Positives = 158/260 (60%), Gaps = 3/260 (1%)

pfam00991, ParA, ParA family ATPase.
CD-Length = 110 residues, 100.0% aligned
Score =  105 bits (264), Expect = 4e-24
Identities = 52/112 (46%), Positives = 71/112 (63%), Gaps = 2/112 (1%)
Genomic Context:
Comment:
ReferenceID:6153
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23295
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33346
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3075_cdd.html
URL:
ReferenceID:35562
Author/Investigator(s): Nardmann J, Messer W.
Title: Identification and characterization of the dnaA upstream region of Thermus thermophilus.
PubMed: 11167017
MedLine:
Source:
Gene. 2000 Dec 31;261(2):299-303.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11167017
Homologs By Global Alignment
Gene ID:3075

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4959 PA5563_tr translation of PA5563 262 99.99 99.99 0 1323.0
139961 gb|AAG08948.1|AE004968_2 (AE004968) chromosome partitioning protein Soj [Pseudomonas aeruginosa PAO1] 262 99.99 99.99 0 1323.0
139962 gb|AAO59021.1| (AE016876) ParA family protein [Pseudomonas syringae pv. tomato str. DC3000] 263 84.03 92.01 1 1147.0
139963 gb|AAN65636.1|AE016190_2 (AE016774) ParA family protein [Pseudomonas putida KT2440] 263 82.88 91.25 1 1135.0
139964 emb|CAA44421.1| (X62540) unnamed protein product [Pseudomonas putida] 263 82.88 91.25 1 1135.0
GC ORFID: 46077How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5563Glimmer Score:
Start: 5793587Stop: 5792799
Length: 789
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA5563 translation of PA5563Homolog Bit Score 514.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene4123 (ORF: BLASTX 445.0), t_PA5563 (ORF: GLIMMER)
GC ORF Sequence
ATGGCTAAGGTATTCGCGATCGCCAACCAGAAAGGCGGTGTCGGCAAGACCACGACCTGTATCAACCTCGCG
GCCTCCCTCGTGGCGACCAAGCGCCGCGTCCTCCTGCTGGACCTGGATCCCCAGGGCAACGCCACCACCGGC
AGCGGCATCGACAAGCACAACCTGGAGCACTCCATCTACGACGTGCTCACCGGCGAGTGCAACCTCGCCGAG
GCCATGCAGTTCTCCGAACACGGCGGCTACCAGTTGTTGCCGGCCAACCGCGACCTGACCGCCGCGGAAGTG
GTGCTGCTGGAAATGGACATGAAGGAAAATCGCCTGCGCAACGCGCTGGCGCCGATCCGCGAGAACTACGAC
TACATCCTCATCGACTGCCCGCCGTCGCTGTCAATGCTCACCGTCAACGCGCTGACCGCCGCCGACGGCGTG
ATCATCCCCATGCAGTGCGAGTACTACGCGCTGGAGGGGCTGACCGACCTGATGAACAGCATCCAGCGCATC
GGCCAGTTGCTCAACCCGACGCTGAAGATCGAGGGTCTGTTGCGGACCATGTACGATCCGCGCATCAGCCTG
ACCAACGATGTCTCCGCGCAGTTGCAGGAGCATTTCGGCGACACCCTCTACAGCACCGTCATCCCGCGTAAC
GTGCGCCTCGCCGAAGCCCCCAGCTTCGGCATGCCGGCGCTGGTTTACGACAAGCAATCCCGCGGCGCCATC
GCCTACCTGGCGCTGGCCGGCGAGCTGGTCCGCCGCCAGCGCGCCAAAGGCCGCGCCGCAACCGCATAA