ViewGene
Locus Name:
GeneID:
Location:

GeneID:3074
TrivialName: PA14_12270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12270
PAO1 Ortholog Locus:PA3985
Sequence Length:762
Protein Length:253
Start: 1058706
Stop: 1059467
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07372.1|AE004816_8 (AE004816) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 250/253 (98%), Positives = 250/253 (98%)
Sequence:
ATGCCGATCCGTTATTTCTTCAAGCAACTGCTGCTGCCGCCGGGCGGCCTGTTGCTGCTGCTGTTTTTCGCT
TTCTGGTGGCGCACCAGCCGACCGAGGCTGGCGCGGCTGTGCGGTGTCTGCGGGTTCTTCGGTCTGTGGCTG
ATGAGTATGCCGCTCAGTGTGGAGCGGATGGGGCGCTGGCTCGAAAGCGAACCGGCCCTGCTGGCGGAGGAT
CTGCCGGGCCTGGCGCAGCGCGCCGACGCCATCGTCATCCTCGGTGTCGGCCGGCAGACCAACGACCCGGCC
TGGGGCGACGATGCGCCGAGCCTGCTGGCGGCCGAGCGGCTGCGCTATGCCGCGCGGCTGGCCAAGACCTCG
GCGCTGCCGGTACTGATCAGCGGCGGGTTGCATTACGGGCGCCCGCCCAGCGAGGCGGCGCTGATGGCCAAT
GCCCTGTTGCAGGACTTCGGCGTGCCGACGCGCTGGCAGGAAGGTCTCAGCCGTACCACCTGGGAAAACGCC
ACCCTGAGCGCCCCGCAGTTGCGCGAGGCCGGCGTGCGCCGGGTGGTGCTGGTGACCCAGGCCTGGCACATG
CAGCGGGCACGCTGGAGCTTCGAGCGCCAGGGGTTCGAGGTGATCCCGGCGCCGGTCGGCTTCCTCGGCGGG
GCCAACCTGCGGCCCTTCGGCGGCTGGCTGCCGGAAGCGCAGGCCTTCTGGCAGAGCGGCATGCTGCTGAAC
GAGGCGATCGGCCTGGTCGGCTATCGCCTGTTCTACCGCTGA
Translation:
MPIRYFFKQLLLPPGGLLLLLFFAFWWRTSRPRLARLCGVCGFFGLWLMSMPLSVERMGRWLESEPALLAED
LPGLAQRADAIVILGVGRQTNDPAWGDDAPSLLAAERLRYAARLAKTSALPVLISGGLHYGRPPSEAALMAN
ALLQDFGVPTRWQEGLSRTTWENATLSAPQLREAGVRRVVLVTQAWHMQRARWSFERQGFEVIPAPVGFLGG
ANLRPFGGWLPEAQAFWQSGMLLNEAIGLVGYRLFYR*
AnnotationID:3082GeneID:3074
AnnotatorUID: urbach
Modification Date/Time: 2004-09-01 12:12:15
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3985
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02698,COG1434
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|3205 pfam02698, DUF218, Uncharacterized ACR, COG1434
Length = 244
Score =  137 bits (346), Expect = 3e-33
Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 12/245 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6151




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23293




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3074
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4958
                           PA3985_tr
                           translation of PA3985
                           253
                           98.81
                           98.81
                           0
                           1323.0
     

     
     
139957
                           gb|AAG07372.1|AE004816_8
                           (AE004816) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           253
                           98.81
                           98.81
                           0
                           1323.0
     

     
     
139958
                           gb|AAN70361.1|AE016678_2
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           254
                           65.74
                           74.80
                           2
                           865.0
     

     
     
139959
                           gb|AAO58238.1|
                           (AE016873) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           256
                           61.71
                           72.26
                           3
                           814.0
     

     
     
139960
                           gb|AAQ59183.1|
                           (AE016915) probable transmembrane protein [Chromobacterium violaceum ATCC 12472]
                           274
                           37.22
                           51.09
                           41
                           361.0
     

     






      

          
GC ORFID: 46076How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3985Glimmer Score: 

          
Start: 3895232Stop: 3894471

          
Length: 762


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3985 translation of PA3985Homolog Bit Score 514.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5339 (ORF: BLASTX 315.0), t_PA3985 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGATCCGTTATTTCTTCAAGCAACTGCTGCTGCCGCCGGGCGGCCTGTTGCTGCTGCTGTTTTTCGCT 
TTCTGGTGGCGCACCAGCCGACCGAGGCTGGCGCGGCTGTGCGGTGTCTGCGGGTTCTTCGGTCTGTGGCTG 
ATGAGTATGCCGCTCAGTGTGGAGCGGATGGGGCGCTGGCTCGAAAGCGAACCGGCCCTGCTGGCGGAGGAT 
CTGCCGGGCCTGGCGCAGCGCGCCGACGCCATCGTCATCCTCGGTGTCGGCCGGCAGACCAACGACCCGGCC 
TGGGGCGACGATGCGCCGAGCCTGCTGGCGGCCGAGCGGCTGCGCTATGCCGCGCGGCTGGCCAAGACCTCG 
GCGCTGCCGGTACTGATCAGCGGCGGGTTGCATTACGGGCGCCCGCCCAGCGAGGCGGCGCTGATGGCCAAT 
GCCCTGTTGCAGGACTTCGGCGTGCCGACGCGCTGGCAGGAAGGTCTCAGCCGTACCACCTGGGAAAACGCC 
ACCCTGAGCGCCCCGCAGTTGCGCGAGGCCGGCGTGCGCCGGGTGGTGCTGGTGACCCAGGCCTGGCACATG 
CAGCGGGCACGCTGGAGCTTCGAGCGCCAGGGGTTCGAGGTGATCCCGGCGCCGGTCGGCTTCCTCGGCGGG 
GCCAACCTGCGGCCCTTCGGCGGCTGGCTGCCGGAAGCGCAGGCCTTCTGGCAGAGCGGCATGCTGCTGAAC 
GAGGCGATCGGCCTGGTCGGCTATCGCCTGTTCTACCGCTGA