ViewGene
Locus Name:
GeneID:
Location:

GeneID:3073
TrivialName: PA14_21160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_21160
PAO1 Ortholog Locus:PA3314
Sequence Length:804
Protein Length:267
Start: 1830410
Stop: 1829607
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06702.1|AE004753_10 (AE004753) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 264/267 (98%), Positives = 265/267 (99%)
Sequence:
GTGAGCCTGAGCCTCGACGGCGTGGACCTGGTCCACGCCGACGGCCAACGCGCCCTTGCCGACATCCGCCTG
CGCCTGGCCGCTGGCGAACGGGTGGCCCTGATCGGACCTTCCGGCGCCGGCAAGACCAGCCTGCTGCGGGTG
CTCGCCAGCCAATGGCGGCCCAGCGCCGGCCGTGTCGAACTGCTCGGCGAGGAGCCCTGGGCGCTATCCGCC
GCCGCCCGCCAACGCCTGCGCGCGCGCATCGGCCTGGTCCACCAGGCGCCGCCGCTGCCGCCACGGCAGCGG
GTGGTCAGCGCGGTACTGGCCGGACGCCTCGGCCAGTGGCCGCTGTGGAAGAGCCTGGCCAGCCTGGTCTAT
CCGCTGGACCGCGCCGGCGCCCACGACGCGCTGCAACGCCTGGATCTCGGCGACAAGCTGTTCCAGCGCTGC
GACCAGCTTTCCGGCGGCCAGTTGCAGCGGGTCGGCATCGCCCGGGTGCTCTACCAGCGCGCCGAGCTGATC
CTCGCCGACGAACCGGTCTCGGCCATGGACCCAGTGCTCGCCGGCCATACCCTGGCCCTGCTCAACCGCGAG
GCCGCCGCGCGCGGCAGCACCCTGCTGGCCAGCCTGCACGCGGTGGACCTGGCGTTGCAACACTTCCCCCGG
GTGATCGGCCTGCGCGCCGGACGCATCGCCTTCGACCTGCCCGCCGGCGAAGTCGACCGCGCCGCGCTGGAC
GCCCTCTACGCCAACGAACAACTGCAGGCCGAGCGCGCCAGCCCGGCCAGCGAACCCGCCGTGGTGCACATC
CCACGATGCTGA
Translation:
MSLSLDGVDLVHADGQRALADIRLRLAAGERVALIGPSGAGKTSLLRVLASQWRPSAGRVELLGEEPWALSA
AARQRLRARIGLVHQAPPLPPRQRVVSAVLAGRLGQWPLWKSLASLVYPLDRAGAHDALQRLDLGDKLFQRC
DQLSGGQLQRVGIARVLYQRAELILADEPVSAMDPVLAGHTLALLNREAAARGSTLLASLHAVDLALQHFPR
VIGLRAGRIAFDLPAGEVDRAALDALYANEQLQAERASPASEPAVVHIPRC*
AnnotationID:3081GeneID:3073
AnnotatorUID: urbach
Modification Date/Time: 2004-03-03 15:03:26
Gene Name:
Confidence Code:3
GeneProduct:probable ABC transporter ATP-binding component
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14735




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23291




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3073
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4956
                           PA3314_tr
                           translation of PA3314
                           267
                           98.87
                           99.25
                           0
                           1323.0
     

     
     
139951
                           gb|AAG06702.1|AE004753_10
                           (AE004753) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           267
                           98.50
                           99.25
                           0
                           1320.0
     

     
     
139952
                           gb|AAN66450.1|AE016274_7
                           (AE016777) phosphate ABC transporter, ATP-binding protein, putative [Pseudomonas putida KT2440]
                           274
                           63.86
                           74.81
                           12
                           842.0
     

     
     
139953
                           gb|AAO54332.1|
                           (AE016858) phosphonate ABC transporter, ATP-binding protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           267
                           63.67
                           76.02
                           2
                           832.0
     

     
     
4957
                           PA3384_tr
                           translation of PA3384
                           286
                           38.81
                           54.54
                           27
                           387.0
     

     






      

          
GC ORFID: 46075How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3314Glimmer Score: 

          
Start: 3123522Stop: 3124325

          
Length: 804


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3314 translation of PA3314Homolog Bit Score 514.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3573 (ORF: BLASTX 327.0), psyr_15may02_Scaffold1_revised_gene1216 (ORF: BLASTX 155.0), t_PA3384 (ORF: BLASTX 151.0), t_PA3314 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCCTGAGCCTCGACGGCGTGGACCTGGTCCACGCCGACGGCCAACGCGCCCTTGCCGACATCCGCCTG 
CGCCTGGCCGCTGGCGAACGGGTGGCCCTGATCGGACCTTCCGGCGCCGGCAAGACCAGCCTGCTGCGGGTG 
CTCGCCAGCCAATGGCGGCCCAGCGCCGGCCGTGTCGAACTGCTCGGCGAGGAGCCCTGGGCGCTATCCGCC 
GCCGCCCGCCAACGCCTGCGCGCGCGCATCGGCCTGGTCCACCAGGCGCCGCCGCTGCCGCCACGGCAGCGG 
GTGGTCAGCGCGGTACTGGCCGGACGCCTCGGCCAGTGGCCGCTGTGGAAGAGCCTGGCCAGCCTGGTCTAT 
CCGCTGGACCGCGCCGGCGCCCACGACGCGCTGCAACGCCTGGATCTCGGCGACAAGCTGTTCCAGCGCTGC 
GACCAGCTTTCCGGCGGCCAGTTGCAGCGGGTCGGCATCGCCCGGGTGCTCTACCAGCGCGCCGAGCTGATC 
CTCGCCGACGAACCGGTCTCGGCCATGGACCCAGTGCTCGCCGGCCATACCCTGGCCCTGCTCAACCGCGAG 
GCCGCCGCGCGCGGCAGCACCCTGCTGGCCAGCCTGCACGCGGTGGACCTGGCGTTGCAACACTTCCCCCGG 
GTGATCGGCCTGCGCGCCGGACGCATCGCCTTCGACCTGCCCGCCGGCGAAGTCGACCGCGCCGCGCTGGAC 
GCCCTCTACGCCAACGAACAACTGCAGGCCGAGCGCGCCAGCCCGGCCAGCGAACCCGCCGTGGTGCACATC 
CCACGATGCTGA