ViewGene

Locus Name:
GeneID:
Location:

GeneID:3070
TrivialName: PA14_38800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38800
PAO1 Ortholog Locus:PA1987
Sequence Length:753
Protein Length:250
Start: 3461277
Stop: 3460525
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05375.1|AE004625_5 (AE004625) pyrroloquinoline quinone biosynthesis protein C [Pseudomonas aeruginosa PAO1]
Identities = 250/250 (100%), Positives = 250/250 (100%)
Sequence:
ATGAGCCGTGCCGCCATGGATCGCGCCGAATTCGAACGGGCGCTGCGCGACAAGGGACGCTACTACCATATC
CACCATCCGTTCCATGTCGCGATGTACGAGGGCCGTGCCAGTCGCGAACAGATCCAGGGCTGGGTGGCGAAC
CGTTTTTACTACCAGGTCAACATCCCGCTGAAGGACGCGGCGATCCTGGCCAACTGTCCCGACCGCGAGGTC
CGCCGCGAGTGGATCCAGCGTATCCTCGACCACGACGGCGCCCCCGGCGAGGCGGGCGGCATCGAGGCCTGG
CTGCGTCTGGCGGAAGCGGTGGGCCTGGAGCGCGAGCAGGTGCTGTCCGAGGAGCGGGTGCTGCCCGGCGTG
CGCTTCGCCGTCGACGCCTACGTCAACTTCGCCCGTCGCGCCAGTTGGCAGGAGGCGGCGAGCAGTTCGCTG
ACCGAACTCTTCGCCCCGCAGATCCACCAGTCGCGGCTGGACAGTTGGCCGCGCCACTATCCGTGGATCGAG
GCGGCCGGCTACGAGTATTTCCGCAGTCGCCTGGCCCAGGCCCGGCGCGACGTCGAGCACGGCCTGCGGATC
ACCCTGGAGCACTATCGGACCCGCGAGGCACAGGAACGCATGCTGGATATCCTGCAATTCAAGCTGGACGTG
TTGTGGAGCATGCTCGACGCGATGAGCATGGCCTACGAACTCGAACGCCCGCCGTACCATACGGTGACCCGC
GAGCGGGTCTGGCATCGGGGGCTGGCATCATGA
Translation:
MSRAAMDRAEFERALRDKGRYYHIHHPFHVAMYEGRASREQIQGWVANRFYYQVNIPLKDAAILANCPDREV
RREWIQRILDHDGAPGEAGGIEAWLRLAEAVGLEREQVLSEERVLPGVRFAVDAYVNFARRASWQEAASSSL
TELFAPQIHQSRLDSWPRHYPWIEAAGYEYFRSRLAQARRDVEHGLRITLEHYRTREAQERMLDILQFKLDV
LWSMLDAMSMAYELERPPYHTVTRERVWHRGLAS*
AnnotationID:3078GeneID:3070
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 17:05:56
Gene Name:pqqC
Confidence Code:2
GeneProduct:pyrroloquinoline quinone biosynthesis protein C
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:coenzyme PQQ synthesis protein C
Functional Category Confidence Code:5
COGs:pfam05312,COG5424
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66009.1|AE016229_10 (AE016775) coenzyme PQQ synthesis protein C [Pseudomonas putida
           KT2440]
          Length = 251

 Score =  443 bits (1139), Expect = e-124
 Identities = 206/243 (84%), Positives = 227/243 (93%)

>emb|CAC48599.1| (AL603642) probable pyrroloquinoline quinone synthesis protein C
           [Sinorhizobium meliloti]
          Length = 256

 Score =  223 bits (567), Expect = 1e-57
 Identities = 115/225 (51%), Positives = 139/225 (61%), Gaps = 1/225 (0%)

Structural Features:
pfam05312, PQQC, Coenzyme PQQ synthesis protein C (PQQC).
CD-Length = 230 residues,  97.8% aligned
Score =  295 bits (756), Expect = 4e-81
Identities = 135/225 (60%), Positives = 156/225 (69%), Gaps = 3/225 (1%)

COG5424, COG5424, Pyrroloquinoline quinone (Coenzyme PQQ) biosynthesis protein C 
[Coenzyme metabolism]
CD-Length = 242 residues, 100.0% aligned
Score =  266 bits (682), Expect = 2e-72
Identities = 119/243 (48%), Positives = 148/243 (60%), Gaps = 3/243 (1%)
Genomic Context:
Comment:
ReferenceID:6143
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23285
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32740
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3070_cdd.html
URL:
ReferenceID:34370
Author/Investigator(s): Toyama H, Chistoserdova L, Lidstrom ME.
Title: Sequence analysis of pqq genes required for biosynthesis of pyrroloquinoline quinone in Methylobacterium extorquens AM1 and the purification of a biosynthetic intermediate.
PubMed: 9043136
MedLine:
Source:
Microbiology. 1997 Feb;143 ( Pt 2):595-602.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9043136
ReferenceID:34373
Author/Investigator(s): Meulenberg JJ, Sellink E, Riegman NH, Postma PW.
Title: Nucleotide sequence and structure of the Klebsiella pneumoniae pqq operon.
PubMed: 1313537
MedLine:
Source:
Mol Gen Genet. 1992 Mar;232(2):284-94.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1313537
Homologs By Global Alignment
Gene ID:3070

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4953 PA1987_tr translation of PA1987 250 99.99 99.99 0 1325.0
139855 gb|AAG05375.1|AE004625_5 (AE004625) pyrroloquinoline quinone biosynthesis protein C [Pseudomonas aeruginosa PAO1] 250 99.99 99.99 0 1325.0
139856 gb|AAN66009.1|AE016229_10 (AE016775) coenzyme PQQ synthesis protein C [Pseudomonas putida KT2440] 251 83.26 91.63 1 1137.0
139857 gb|AAO54054.1| (AE016857) coenzyme PQQ synthesis protein C [Pseudomonas syringae pv. tomato str. DC3000] 251 82.07 91.23 1 1126.0
139859 emb|CAA29754.1| (X06452) I protein [Acinetobacter calcoaceticus] 252 71.42 85.71 2 998.0
GC ORFID: 46072How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1987Glimmer Score:
Start: 1492634Stop: 1493386
Length: 753
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1987 translation of PA1987Homolog Bit Score 514.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6799 (ORF: BLASTX 439.0), t_PA1987 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCGTGCCGCCATGGATCGCGCCGAATTCGAACGGGCGCTGCGCGACAAGGGACGCTACTACCATATC
CACCATCCGTTCCATGTCGCGATGTACGAGGGCCGTGCCAGTCGCGAACAGATCCAGGGCTGGGTGGCGAAC
CGTTTTTACTACCAGGTCAACATCCCGCTGAAGGACGCGGCGATCCTGGCCAACTGTCCCGACCGCGAGGTC
CGCCGCGAGTGGATCCAGCGTATCCTCGACCACGACGGCGCCCCCGGCGAGGCGGGCGGCATCGAGGCCTGG
CTGCGTCTGGCGGAAGCGGTGGGCCTGGAGCGCGAGCAGGTGCTGTCCGAGGAGCGGGTGCTGCCCGGCGTG
CGCTTCGCCGTCGACGCCTACGTCAACTTCGCCCGTCGCGCCAGTTGGCAGGAGGCGGCGAGCAGTTCGCTG
ACCGAACTCTTCGCCCCGCAGATCCACCAGTCGCGGCTGGACAGTTGGCCGCGCCACTATCCGTGGATCGAG
GCGGCCGGCTACGAGTATTTCCGCAGTCGCCTGGCCCAGGCCCGGCGCGACGTCGAGCACGGCCTGCGGATC
ACCCTGGAGCACTATCGGACCCGCGAGGCACAGGAACGCATGCTGGATATCCTGCAATTCAAGCTGGACGTG
TTGTGGAGCATGCTCGACGCGATGAGCATGGCCTACGAACTCGAACGCCCGCCGTACCATACGGTGACCCGC
GAGCGGGTCTGGCATCGGGGGCTGGCATCATGA