ViewGene
Locus Name:
GeneID:
Location:

GeneID:3069
TrivialName: PA14_45610
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_45610
PAO1 Ortholog Locus:PA1457
Sequence Length:789
Protein Length:262
Start: 4058180
Stop: 4057392
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04846.1|AE004575_5 (AE004575) chemotaxis protein CheZ [Pseudomonas aeruginosa PAO1]
Identities = 262/262 (100%), Positives = 262/262 (100%)
Sequence:
ATGGTGCTTGGTAACGATTCCACGGGCGACGAATTCGAATCGACCCTGAAAAAACACGCGCGCGAACTGGTG
GACTGTCTCGAACGGGGGCACTTCCAGCAGGCGGTGCAATTGATCCAGGAGCTCAGCCAGGCCAGGGACCGT
GGCCTCTACCAGGAAGTGGGCAAGCTGACCCGCGAACTGCACAACGCCATTGTCGATTTCCAGATCGACCCG
CATTCCCCCCACGCGCAGGAAATGTCGCAGATCGCCGATGCCACCGATCGTCTTTCCTACGTGGTGGAAATG
ACCGAGAAGGCCGCCAACCGGACCATGGACCTGGTGGAGCAGAGCGCCCCGCTGGTCAACCAACTGGGCGAC
GATTCGCGGGAGCTGCACCAGGAGTGGCAACGCTTCATGCGCCGGGAAATCGACGCCGACGGCTTCCGCGAG
CTGGCCAAGCGCATCGAACAGTTCCTCGTGCGCAGCGGCGAGAACGCTGGCCAGTTGTCCTCGCAGCTCAAT
GACATCCTGCTGGCGCAGGATTACCAGGACCTGACCGGCCAGGTGATCAAGCGTGTCACCAAGCTGGTCACC
GAGGTCGAGAGCAACCTCGTGAAGCTGGTCTGGATGGCCGGCCAGGTGGACCGTTACGCCGGAATCGAGCAC
GACCACGTGAGCATGCGCCACCAGGCCGCGCTGGAGCGTTCGGCCAAGGGCGAGGGGCCGCAGGTCGCCGCG
GAAAAACGAGAGGATGTGGTGTCCGGGCAGGATGACGTGGACGATCTGCTGTCCAGCCTGGGTTTCTGA
Translation:
MVLGNDSTGDEFESTLKKHARELVDCLERGHFQQAVQLIQELSQARDRGLYQEVGKLTRELHNAIVDFQIDP
HSPHAQEMSQIADATDRLSYVVEMTEKAANRTMDLVEQSAPLVNQLGDDSRELHQEWQRFMRREIDADGFRE
LAKRIEQFLVRSGENAGQLSSQLNDILLAQDYQDLTGQVIKRVTKLVTEVESNLVKLVWMAGQVDRYAGIEH
DHVSMRHQAALERSAKGEGPQVAAEKREDVVSGQDDVDDLLSSLGF*
AnnotationID:3077GeneID:3069
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 12:12:07
Gene Name:cheZ
Confidence Code:1
GeneProduct:chemotaxis protein CheZ
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3143,pfam04344
Secondary Functional Category(ies):cell motility and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69918.1|AE016630_9 (AE016790) chemotaxis protein CheZ [Pseudomonas putida KT2440]
          Length = 262

 Score =  348 bits (893), Expect = 2e-95
 Identities = 177/253 (69%), Positives = 211/253 (83%), Gaps = 1/253 (0%)

>gb|AAN03369.1|AF481091_6 (AF481091) CheZ [Pseudomonas fluorescens]
          Length = 262

 Score =  346 bits (887), Expect = 9e-95
 Identities = 180/257 (70%), Positives = 213/257 (82%), Gaps = 2/257 (0%)

>gb|AAO55499.1| (AE016862) chemotaxis protein CheZ [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 228

 Score =  308 bits (788), Expect = 3e-83
 Identities = 157/228 (68%), Positives = 188/228 (82%), Gaps = 1/228 (0%)






 
Structural Features:
COG3143, CheZ, Chemotaxis protein 
[Cell motility and secretion / Signal transduction mechanisms]
CD-Length = 217 residues, 100.0% aligned
Score =  259 bits (664), Expect = 2e-70
Identities = 100/232 (43%), Positives = 133/232 (57%), Gaps = 15/232 (6%)

pfam04344, CheZ, Chemotaxis phosphatase, CheZ.
CD-Length = 239 residues,  98.3% aligned
Score =  149 bits (378), Expect = 2e-37
Identities = 84/246 (34%), Positives = 137/246 (55%), Gaps = 12/246 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6141




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23283




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37378




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3069_cdd.html


    		




 
URL:

















    ReferenceID:37962




  
Author/Investigator(s):
        Masduki A, Nakamura J, Ohga T, Umezaki R, Kato J, Ohtake H.





  
Title:
        Isolation and characterization of chemotaxis mutants and genes of Pseudomonas aeruginosa.




  
PubMed:
        7860605


MedLine:
        




    
Source:
J Bacteriol. 1995 Feb;177(4):948-52.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7860605









           
Homologs By Global Alignment 

           

       



     
Gene ID:3069
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4952
                           PA1457_tr
                           translation of PA1457
                           262
                           99.99
                           99.99
                           0
                           1325.0
     

     
     
139845
                           gb|AAG04846.1|AE004575_5
                           (AE004575) chemotaxis protein CheZ [Pseudomonas aeruginosa PAO1]
                           262
                           99.99
                           99.99
                           0
                           1325.0
     

     
     
139846
                           dbj|BAA07056.1|
                           (D37810) CheZ [Pseudomonas aeruginosa]
                           262
                           85.11
                           86.25
                           35
                           1127.0
     

     
     
139847
                           dbj|BAA33548.1|
                           (AB012767) CheZ [Pseudomonas aeruginosa]
                           262
                           85.11
                           86.25
                           35
                           1127.0
     

     
     
139849
                           gb|AAN03369.1|AF481091_6
                           (AF481091) CheZ [Pseudomonas fluorescens]
                           263
                           68.82
                           81.36
                           2
                           888.0
     

     






      

          
GC ORFID: 46071How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1457Glimmer Score: 

          
Start: 895729Stop: 896517

          
Length: 789


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1457 translation of PA1457Homolog Bit Score 514.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7941 (ORF: BLASTX 347.0), t_PA1457 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTGCTTGGTAACGATTCCACGGGCGACGAATTCGAATCGACCCTGAAAAAACACGCGCGCGAACTGGTG 
GACTGTCTCGAACGGGGGCACTTCCAGCAGGCGGTGCAATTGATCCAGGAGCTCAGCCAGGCCAGGGACCGT 
GGCCTCTACCAGGAAGTGGGCAAGCTGACCCGCGAACTGCACAACGCCATTGTCGATTTCCAGATCGACCCG 
CATTCCCCCCACGCGCAGGAAATGTCGCAGATCGCCGATGCCACCGATCGTCTTTCCTACGTGGTGGAAATG 
ACCGAGAAGGCCGCCAACCGGACCATGGACCTGGTGGAGCAGAGCGCCCCGCTGGTCAACCAACTGGGCGAC 
GATTCGCGGGAGCTGCACCAGGAGTGGCAACGCTTCATGCGCCGGGAAATCGACGCCGACGGCTTCCGCGAG 
CTGGCCAAGCGCATCGAACAGTTCCTCGTGCGCAGCGGCGAGAACGCTGGCCAGTTGTCCTCGCAGCTCAAT 
GACATCCTGCTGGCGCAGGATTACCAGGACCTGACCGGCCAGGTGATCAAGCGTGTCACCAAGCTGGTCACC 
GAGGTCGAGAGCAACCTCGTGAAGCTGGTCTGGATGGCCGGCCAGGTGGACCGTTACGCCGGAATCGAGCAC 
GACCACGTGAGCATGCGCCACCAGGCCGCGCTGGAGCGTTCGGCCAAGGGCGAGGGGCCGCAGGTCGCCGCG 
GAAAAACGAGAGGATGTGGTGTCCGGGCAGGATGACGTGGACGATCTGCTGTCCAGCCTGGGTTTCTGA