ViewGene
Locus Name:
GeneID:
Location:

GeneID:3068
TrivialName: PA14_61060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61060
PAO1 Ortholog Locus:PA4615
Sequence Length:777
Protein Length:258
Start: 5446006
Stop: 5445230
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08003.1|AE004875_9 (AE004875) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 258/258 (100%), Positives = 258/258 (100%)
Sequence:
ATGACCGCCAGCGAAGAGAAATTCACCCGCCAGACGCTGCTCGACGTGCAGCCTCTGACTCCCAACCTGTTC
ACCCTGCGTACCAGCCGCGACGCGGGATTCCGGTTCCGCGCCGGGCAATTCGCCCGGCTCGGCGTGTACAAG
CCCAGCGGCAGTATCGTCTGGCGCGCCTACTCGATGGTTTCGGCGCCTCATGACGAATTCCTCGACTTCTTT
TCCATCGTCGTCCCGGACGGCGAGTTCACCAGCGAACTCAGCCGCCTGCGCGAGGGCGACCAGTTGCTGGTC
GATCGCCAGGCCTTCGGCTTCCTCACCCTCGACCGCTTCGTGGATGGTCGTGACCTTTGGCTGCTGGCCACC
GGTACCGGTGTGGCGCCGTTCGTCTCGATCCTGCAGGACTTCGAGGTCTGGGAGCGCTTCGAAAGCATCAAG
CTGGTCTACAGCGTGCGCGAGAGCAAGGAGCTGGCCTACCGCGAGCTGATCGCCGGCCTCGCCGAGCGCGAA
TACCTGGCCGAGCATGCCCACAAGCTGCAGTTCATCCCGGTGGTGACCCGCGAGCAGGTACCCGGTTGCCTG
AACGGACGTATCACCACGCTGATCGAGAACGGCGATCTGGAGCGTGCCGCCGACCTGGAACTGACCCCGGAG
CATTCGCGGGTGATGCTCTGCGGCAACCCGCAGATGATCGAGGACACCCGCGCCGTGCTGAAGGCTCGCGGC
ATGAACCTCAGTCTGACCCGGCGCCCGGGGCAGGTGGCGGTGGAGAACTACTGGTAG
Translation:
MTASEEKFTRQTLLDVQPLTPNLFTLRTSRDAGFRFRAGQFARLGVYKPSGSIVWRAYSMVSAPHDEFLDFF
SIVVPDGEFTSELSRLREGDQLLVDRQAFGFLTLDRFVDGRDLWLLATGTGVAPFVSILQDFEVWERFESIK
LVYSVRESKELAYRELIAGLAEREYLAEHAHKLQFIPVVTREQVPGCLNGRITTLIENGDLERAADLELTPE
HSRVMLCGNPQMIEDTRAVLKARGMNLSLTRRPGQVAVENYW*
AnnotationID:3076GeneID:3068
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 07:07:09
Gene Name:
Confidence Code:3
GeneProduct:putative ferredoxin--NADP+ reductase
Cell Localization:()
Synonyms:fnr-2
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1018
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70219.1|AE016661_5 (AE016791) ferredoxin--NADP+ reductase, putative [Pseudomonas
           putida KT2440]
          Length = 258

 Score =  430 bits (1106), Expect = e-120
 Identities = 214/258 (82%), Positives = 235/258 (91%)


>emb|CAB72021.1| (AJ391259) putative ferredoxin-NADP+ reductase [Neisseria
           meningitidis]
          Length = 259

 Score =  221 bits (562), Expect = 4e-57
 Identities = 109/258 (42%), Positives = 172/258 (66%), Gaps = 3/258 (1%)






 
Structural Features:
COG1018, Hmp, Flavodoxin reductases 
(ferredoxin-NADPH reductases) family 1 
[Energy production and conversion]
CD-Length = 266 residues,  98.9% aligned
Score =  170 bits (431), Expect = 4e-43
Identities = 79/267 (29%), Positives = 114/267 (42%), Gaps = 19/267 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6139




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23281




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31609




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3068_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3068
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4950
                           PA4615_tr
                           translation of PA4615
                           258
                           99.99
                           99.99
                           0
                           1326.0
     

     
     
139796
                           gb|AAG08003.1|AE004875_9
                           (AE004875) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           258
                           99.99
                           99.99
                           0
                           1326.0
     

     
     
139797
                           gb|AAN70219.1|AE016661_5
                           (AE016791) ferredoxin--NADP+ reductase, putative [Pseudomonas putida KT2440]
                           258
                           82.94
                           91.08
                           0
                           1106.0
     

     
     
139798
                           gb|AAO58088.1|
                           (AE016872) ferredoxin--NADP reductase [Pseudomonas syringae pv. tomato str. DC3000]
                           258
                           78.29
                           88.37
                           0
                           1059.0
     

     
     
139799
                           gb|AAQ61705.1|
                           (AE016924) probable ferredoxin-NADP reductase [Chromobacterium violaceum ATCC 12472]
                           263
                           48.28
                           69.58
                           5
                           679.0
     

     






      

          
GC ORFID: 46070How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4615Glimmer Score: 

          
Start: 4709686Stop: 4708910

          
Length: 777


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4615 translation of PA4615Homolog Bit Score 515.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5399 (ORF: BLASTX 426.0), psyr_15may02_Scaffold3_revised_gene4666 (ORF: BLASTX 185.0), t_PA3397 (ORF: BLASTX 180.0), t_PA4615 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCCAGCGAAGAGAAATTCACCCGCCAGACGCTGCTCGACGTGCAGCCTCTGACTCCCAACCTGTTC 
ACCCTGCGTACCAGCCGCGACGCGGGATTCCGGTTCCGCGCCGGGCAATTCGCCCGGCTCGGCGTGTACAAG 
CCCAGCGGCAGTATCGTCTGGCGCGCCTACTCGATGGTTTCGGCGCCTCATGACGAATTCCTCGACTTCTTT 
TCCATCGTCGTCCCGGACGGCGAGTTCACCAGCGAACTCAGCCGCCTGCGCGAGGGCGACCAGTTGCTGGTC 
GATCGCCAGGCCTTCGGCTTCCTCACCCTCGACCGCTTCGTGGATGGTCGTGACCTTTGGCTGCTGGCCACC 
GGTACCGGTGTGGCGCCGTTCGTCTCGATCCTGCAGGACTTCGAGGTCTGGGAGCGCTTCGAAAGCATCAAG 
CTGGTCTACAGCGTGCGCGAGAGCAAGGAGCTGGCCTACCGCGAGCTGATCGCCGGCCTCGCCGAGCGCGAA 
TACCTGGCCGAGCATGCCCACAAGCTGCAGTTCATCCCGGTGGTGACCCGCGAGCAGGTACCCGGTTGCCTG 
AACGGACGTATCACCACGCTGATCGAGAACGGCGATCTGGAGCGTGCCGCCGACCTGGAACTGACCCCGGAG 
CATTCGCGGGTGATGCTCTGCGGCAACCCGCAGATGATCGAGGACACCCGCGCCGTGCTGAAGGCTCGCGGC 
ATGAACCTCAGTCTGACCCGGCGCCCGGGGCAGGTGGCGGTGGAGAACTACTGGTAG