ViewGene

Locus Name:
GeneID:
Location:

GeneID:3067
TrivialName: PA14_11530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11530
PAO1 Ortholog Locus:PA4045
Sequence Length:798
Protein Length:265
Start: 996898
Stop: 997695
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07432.1|AE004821_5 (AE004821) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 263/265 (99%), Positives = 264/265 (99%)
Sequence:
ATGCGCTCGTTCTGGCTGCTCGCCTGCCTGCTCCTCAGCCTTTCCGCCGGGGCGGCGCAGCGGGTGGTCAGC
CTGGCGCCTTCGCTGACCGACAGCGTCCTCGAACTCGGCGCCGCGCGCCGCCTGGTCGGCGTGCTGGATGGT
GGCGAGCGTCCGGCGGCGATTGGCGACCTGCCTTCCGTCGGCCGCTACGGCCAGGTCAATCTCGAACGCCTG
CTGGAACTGCAGCCCGATCTGATCCTGGTCTGGCCCGGCAGCGTGCCCGAGGCGCAGTTGCAGCGCCTGCGG
GACTTCGGCATCGCCCTCTTCATCGCCGAACCGCACAGCCTCGACGAACTGGCCCTGCAACTGGCTGCGCTG
GGCGAGGCATTGGGCGAGGCCGAGGCCGGCCAGCGGCTGTCGACCAGGTTCCGCGAAGGCATGCAGCGCCTG
GCCGAGCGCTACCGGCGGGACAAGCCGCTGAAGGTGTTCTACCAGGTCTGGGACCGGCCGCTGTACACCATT
GGCGGACGCCAGGTGATCAGCGATGCGCTGCGCGTCTGCGGCGCCGAAAACCTGTTCGGCGACCTGCCGCAG
CCGGCGCCGCAGGTCAGCGTCGAGGCGGTTCTGGCGCGCGATCCGGCGGTCATCGTCGCCGGCAGTCACGCC
CAGCTCGAACTCTGGCGGCAATGGCCGGCGCTGGCGGCGACGCGGCGCGGACAGCTGTACCGGATCGAAGAC
AAGAACCTCGAGCGGCCGAGCTTCGCCATGCTGGCGGCGACCGAGAAACTCTGCCGCTCGCTCGCCGGGGCG
CGCTGA
Translation:
MRSFWLLACLLLSLSAGAAQRVVSLAPSLTDSVLELGAARRLVGVLDGGERPAAIGDLPSVGRYGQVNLERL
LELQPDLILVWPGSVPEAQLQRLRDFGIALFIAEPHSLDELALQLAALGEALGEAEAGQRLSTRFREGMQRL
AERYRRDKPLKVFYQVWDRPLYTIGGRQVISDALRVCGAENLFGDLPQPAPQVSVEAVLARDPAVIVAGSHA
QLELWRQWPALAATRRGQLYRIEDKNLERPSFAMLAATEKLCRSLAGAR*
AnnotationID:3075GeneID:3067
AnnotatorUID: urbach
Modification Date/Time: 2004-10-06 14:02:12
Gene Name:
Confidence Code:3
GeneProduct:putative ABC transporter
Cell Localization:(8) Periplasmic
Synonyms:PA4045
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0614,COG4558,pfam01497
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
gnl|CDD|10484 COG0614, FepB, ABC-type Fe3+-hydroxamate transport system,
periplasmic component [Inorganic ion transport and metabolism]
Length = 319
Score =  126 bits (316), Expect = 7e-30
Identities = 73/267 (27%), Positives = 115/267 (43%), Gaps = 20/267 (7%)
Genomic Context:
Comment:
ReferenceID:6137
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23279
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3067

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4949 PA4045_tr translation of PA4045 265 99.24 99.62 0 1327.0
139794 gb|AAG07432.1|AE004821_5 (AE004821) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 265 99.24 99.62 0 1327.0
139795 gb|AAN66151.1|AE016243_3 (AE016776) periplasmic cobalamin-binding protein HutB, putative [Pseudomonas putida KT2440] 271 54.61 70.84 7 737.0
GC ORFID: 46069How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4045Glimmer Score:
Start: 3957039Stop: 3956242
Length: 798
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4045 translation of PA4045Homolog Bit Score 515.0
Other Homologs: t_PA4045 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCTCGTTCTGGCTGCTCGCCTGCCTGCTCCTCAGCCTTTCCGCCGGGGCGGCGCAGCGGGTGGTCAGC
CTGGCGCCTTCGCTGACCGACAGCGTCCTCGAACTCGGCGCCGCGCGCCGCCTGGTCGGCGTGCTGGATGGT
GGCGAGCGTCCGGCGGCGATTGGCGACCTGCCTTCCGTCGGCCGCTACGGCCAGGTCAATCTCGAACGCCTG
CTGGAACTGCAGCCCGATCTGATCCTGGTCTGGCCCGGCAGCGTGCCCGAGGCGCAGTTGCAGCGCCTGCGG
GACTTCGGCATCGCCCTCTTCATCGCCGAACCGCACAGCCTCGACGAACTGGCCCTGCAACTGGCTGCGCTG
GGCGAGGCATTGGGCGAGGCCGAGGCCGGCCAGCGGCTGTCGACCAGGTTCCGCGAAGGCATGCAGCGCCTG
GCCGAGCGCTACCGGCGGGACAAGCCGCTGAAGGTGTTCTACCAGGTCTGGGACCGGCCGCTGTACACCATT
GGCGGACGCCAGGTGATCAGCGATGCGCTGCGCGTCTGCGGCGCCGAAAACCTGTTCGGCGACCTGCCGCAG
CCGGCGCCGCAGGTCAGCGTCGAGGCGGTTCTGGCGCGCGATCCGGCGGTCATCGTCGCCGGCAGTCACGCC
CAGCTCGAACTCTGGCGGCAATGGCCGGCGCTGGCGGCGACGCGGCGCGGACAGCTGTACCGGATCGAAGAC
AAGAACCTCGAGCGGCCGAGCTTCGCCATGCTGGCGGCGACCGAGAAACTCTGCCGCTCGCTCGCCGGGGCG
CGCTGA