ViewGene

Locus Name:
GeneID:
Location:

GeneID:3066
TrivialName: PA14_25320
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25320
PAO1 Ortholog Locus:PA2997
Sequence Length:786
Protein Length:261
Start: 2214390
Stop: 2215175
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06385.1|AE004724_14 (AE004724) Na+-translocating NADH:ubiquinone oxidoreductase subunit Nrq3 [Pseudomonas aeruginosa PAO1]
Identities = 260/261 (99%), Positives = 261/261 (100%)
Sequence:
ATGGCTAATCAAGAATCCACCACCCGCACACTGCTGGTAGCCCTGGTGGTGTGCCTGGTCAGCTCGGTGTTC
GTCGCCGGCGCGGCGGTGGCGCTGAAGCCGACCCAGGCGGAAAACCGCCTGCTCGACAAGCAGCGCAGCATC
CTCGCCATCGCCGGTCTCGGCGAGCCGGGCATGTCCGGCAAAGAGGTCAAGGCGCTGTTCGACAGTCGCATC
ACCGCCAAGGTGGTCGACCTGCAGAGCGGCACCTTCAGCGATGCCCAGGACCCGCTCGGCTACGACCCGCTG
AAAGCGGCCAAGGACCCGGCGCTGTCGGAGGCGCTGCCCGCCGCCGAGGACATCGCCTCGATCAAGCGCCGC
GAGCGCTATACCACGGTCTACCTGGTGGAGACCGACGGCAAGCTCGACACCCTGATCCTGCCGGTGCGCGGC
TACGGTCTGTGGTCGACCCTGTACGGCTTCCTGGCGCTCAAGGGCGACCTCAACACGGTCGCCGGCTTCGGC
TTCTACCAGCATGGCGAGACCCCTGGTCTCGGCGGCGAGGTCGACAATCCGAAATGGAAGGCGCTGTGGGTC
GGCAAGACCCTCTACGACGCCCAGGGCGATCTTGCCGTACAGATCATCAAGGGCTCGGTGGACCCGCAATCG
GCGAAGGCGACCCACCAGGTCGACGGCCTGGCCGGCGCCACCCTGACCAGCAAGGGTGTCGACAACCTGCTG
CATTTCTGGCTCGGCAAGGACGGTTTCGACGCCTTCCTCGCCAATCTGCGCAAAGGGGAGGCGTGA
Translation:
MANQESTTRTLLVALVVCLVSSVFVAGAAVALKPTQAENRLLDKQRSILAIAGLGEPGMSGKEVKALFDSRI
TAKVVDLQSGTFSDAQDPLGYDPLKAAKDPALSEALPAAEDIASIKRRERYTTVYLVETDGKLDTLILPVRG
YGLWSTLYGFLALKGDLNTVAGFGFYQHGETPGLGGEVDNPKWKALWVGKTLYDAQGDLAVQIIKGSVDPQS
AKATHQVDGLAGATLTSKGVDNLLHFWLGKDGFDAFLANLRKGEA*
AnnotationID:3074GeneID:3066
AnnotatorUID: diggins
Modification Date/Time: 2005-04-11 14:02:18
Gene Name:nqrC
Confidence Code:2
GeneProduct:Na+-translocating NADH:ubiquinone oxidoreductase subunit Nrq3
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:Na-translocating NADH ubiquinone oxidoreductase, gamma chain
Functional Category Confidence Code:5
COGs:COG2869
Secondary Functional Category(ies):
EC Number:1.6.5.-
Status:ACTIVE
Pathway:
Homology:
>emb|CAD86307.1| (BX321864) Na+-translocating NADH:ubiquinone oxidoreductase subunit
           Nrq3 [Nitrosomonas europaea ATCC 19718]
          Length = 264

 Score =  263 bits (673), Expect = 6e-70
 Identities = 135/256 (52%), Positives = 177/256 (69%), Gaps = 5/256 (1%)

>gb|AAM84534.1|AE013698_8 (AE013698) Na-translocating NADH ubiquinone oxidoreductase, gamma
           chain [Yersinia pestis KIM]
          Length = 285

 Score =  256 bits (654), Expect = 9e-68
 Identities = 133/258 (51%), Positives = 177/258 (68%), Gaps = 5/258 (1%)

>gb|AAN54176.1|AE015555_3 (AE015555) NADH:ubiquinone oxidoreductase, Na translocating, gamma
           subunit [Shewanella oneidensis MR-1]
          Length = 262

 Score =  239 bits (609), Expect = 2e-62
 Identities = 129/263 (49%), Positives = 175/263 (66%), Gaps = 11/263 (4%)

Structural Features:
COG2869, NqrC, Na+-transporting NADH:ubiquinone oxidoreductase, 
subunit NqrC 
[Energy production and conversion]
CD-Length = 264 residues,  97.0% aligned
Score =  357 bits (917), Expect = 8e-100
Identities = 146/260 (56%), Positives = 185/260 (71%), Gaps = 5/260 (1%)
Genomic Context:
Comment:
ReferenceID:6135
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23277
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36058
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3066_cdd.html
URL:
ReferenceID:36457
Author/Investigator(s): Hayashi M, Hirai K, Unemoto T.
Title: Sequencing and the alignment of structural genes in the nqr operon encoding the Na(+)-translocating NADH-quinone reductase from Vibrio alginolyticus.
PubMed: 7729558
MedLine:
Source:
FEBS Lett. 1995 Apr 17;363(1-2):75-7.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=95246889&dopt=Abstract
ReferenceID:36464
Author/Investigator(s): Beattie P, Tan K, Bourne RM, Leach D, Rich PR, Ward FB.
Title: Cloning and sequencing of four structural genes for the Na(+)-translocating NADH-ubiquinone oxidoreductase of Vibrio alginolyticus.
PubMed: 7805867
MedLine:
Source:
FEBS Lett. 1994 Dec 19;356(2-3):333-8.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=95104445&dopt=Abstract
ReferenceID:36469
Author/Investigator(s): Hayashi M, Hirai K, Unemoto T.
Title: Cloning of the Na(+)-translocating NADH-quinone reductase gene from the marine bacterium Vibrio alginolyticus and the expression of the beta-subunit in Escherichia coli.
PubMed: 7805866
MedLine:
Source:
FEBS Lett. 1994 Dec 19;356(2-3):330-2.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=95104444&dopt=Abstract
Homologs By Global Alignment
Gene ID:3066

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4948 PA2997_tr translation of PA2997 261 99.61 99.99 0 1326.0
139772 gb|AAG06385.1|AE004724_14 (AE004724) Na+-translocating NADH:ubiquinone oxidoreductase subunit Nrq3 [Pseudomonas aeruginosa PAO1] 261 99.61 99.99 0 1326.0
139773 emb|CAD86307.1| (BX321864) Na+-translocating NADH:ubiquinone oxidoreductase subunit Nrq3 [Nitrosomonas europaea ATCC 19718] 268 51.11 67.16 11 674.0
139775 emb|CAC92473.1| (AJ414156) Na+-translocating NADH-quinone reductase subunit C [Yersinia pestis CO92] 273 49.08 65.20 19 656.0
139777 gb|AAN54176.1|AE015555_3 (AE015555) NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit [Shewanella oneidensis MR-1] 268 48.13 65.29 13 618.0
GC ORFID: 46068How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2997Glimmer Score:
Start: 2739535Stop: 2738750
Length: 786
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2997 translation of PA2997Homolog Bit Score 515.0
Other Homologs: t_PA2997 (ORF: GLIMMER)
GC ORF Sequence
ATGGCTAATCAAGAATCCACCACCCGCACACTGCTGGTAGCCCTGGTGGTGTGCCTGGTCAGCTCGGTGTTC
GTCGCCGGCGCGGCGGTGGCGCTGAAGCCGACCCAGGCGGAAAACCGCCTGCTCGACAAGCAGCGCAGCATC
CTCGCCATCGCCGGTCTCGGCGAGCCGGGCATGTCCGGCAAAGAGGTCAAGGCGCTGTTCGACAGTCGCATC
ACCGCCAAGGTGGTCGACCTGCAGAGCGGCACCTTCAGCGATGCCCAGGACCCGCTCGGCTACGACCCGCTG
AAAGCGGCCAAGGACCCGGCGCTGTCGGAGGCGCTGCCCGCCGCCGAGGACATCGCCTCGATCAAGCGCCGC
GAGCGCTATACCACGGTCTACCTGGTGGAGACCGACGGCAAGCTCGACACCCTGATCCTGCCGGTGCGCGGC
TACGGTCTGTGGTCGACCCTGTACGGCTTCCTGGCGCTCAAGGGCGACCTCAACACGGTCGCCGGCTTCGGC
TTCTACCAGCATGGCGAGACCCCTGGTCTCGGCGGCGAGGTCGACAATCCGAAATGGAAGGCGCTGTGGGTC
GGCAAGACCCTCTACGACGCCCAGGGCGATCTTGCCGTACAGATCATCAAGGGCTCGGTGGACCCGCAATCG
GCGAAGGCGACCCACCAGGTCGACGGCCTGGCCGGCGCCACCCTGACCAGCAAGGGTGTCGACAACCTGCTG
CATTTCTGGCTCGGCAAGGACGGTTTCGACGCCTTCCTCGCCAATCTGCGCAAAGGGGAGGCGTGA