ViewGene
Locus Name:
GeneID:
Location:

GeneID:3064
TrivialName: PA14_06270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06270
PAO1 Ortholog Locus:PA0480
Sequence Length:798
Protein Length:265
Start: 553627
Stop: 554424
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03869.1|AE004485_10 (AE004485) probable hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 263/265 (99%), Positives = 264/265 (99%)
Sequence:
ATGGGCAACCTGTCTTTTCTCGCTACCAGCGATGGCGCCAGCCTCGCCTATCGCCTGGACGGTGCGGCGGAG
AAACCGCTGCTGGCGCTCTCCAACTCCATCGGTACCACCCTGCACATGTGGGATGCACAACTCCCGGCACTG
ACCCGGCACTTCCGCGTCCTGCGCTACGACGCCCGTGGCCATGGCGCCTCCAGCGTGCCGCCGGGGCCCTAC
ACCCTGGCCCGGCTGGGCGAGGACGTACTGGAGCTGCTCGACGCGCTGGAGGTACGGCGCGCGCATTTCCTA
GGCCTGTCCCTGGGCGGGATCGTCGGCCAGTGGCTGGCGCTGCATGCGCCGCAGCGGATCGAGCGGCTGGTG
CTGGCCAACACCTCGGCCTGGCTTGGCCCGGCGGCGCAGTGGGACGAGCGCATCGCCGCGGTGCTGCAGGCC
GAGGACATGAGCGATACCGCCGCGGGCTTCCTCGGCAACTGGTTTCCGCCGGCGCTGCTGGAGCGCGCCGAG
CCCGTCGTCGAGCGCTTCCGGGCGATGCTCATGGCCACCAACCGGCACGGCCTGGCCGGCTCCTTCGCGGCG
GTGCGCGATACCGACCTGCGCGCGCAACTGGCGCGGATCGAGCGGCCGACCCTGGTGATCGCAGGGGCGTAC
GACACGGTCACCGCCGCCAGCCACGGCGAGCTGATCGCCACGTCGATTGCCGGGGCCAGGCTGGTTACGCTG
CCGGCGGTGCATCTGTCGAACGTCGAGTTCCCGCAGGCGTTCGAAGGCGCGGTGCTGAGCTTTCTCGGCGCA
GCCTGA
Translation:
MGNLSFLATSDGASLAYRLDGAAEKPLLALSNSIGTTLHMWDAQLPALTRHFRVLRYDARGHGASSVPPGPY
TLARLGEDVLELLDALEVRRAHFLGLSLGGIVGQWLALHAPQRIERLVLANTSAWLGPAAQWDERIAAVLQA
EDMSDTAAGFLGNWFPPALLERAEPVVERFRAMLMATNRHGLAGSFAAVRDTDLRAQLARIERPTLVIAGAY
DTVTAASHGELIATSIAGARLVTLPAVHLSNVEFPQAFEGAVLSFLGAA*
AnnotationID:3072GeneID:3064
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 17:05:37
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:catD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative 3-oxoadipate enol-lactone hydrolase
Functional Category Confidence Code:5
COGs:COG0596,pfam00561
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB49603.1| (AP002999) probable beta-ketoadipate enol-lactone hydrolase
           [Mesorhizobium loti]
          Length = 263

 Score =  346 bits (888), Expect = 7e-95
 Identities = 173/262 (66%), Positives = 202/262 (77%)

>gb|AAG03620.1|AE004461_3 (AE004461) beta-ketoadipate enol-lactone hydrolase [Pseudomonas
           aeruginosa PAO1]
          Length = 263

 Score =  247 bits (630), Expect = 6e-65
 Identities = 131/258 (50%), Positives = 165/258 (63%), Gaps = 3/258 (1%)








 
Structural Features:
COG0596, MhpC, Predicted hydrolases or acyltransferases 
CD-Length = 282 residues,  99.6% aligned
Score = 86.3 bits (211), Expect = 3e-18
Identities = 91/284 (32%), Positives = 125/284 (44%), Gaps = 26/284 (9%)

pfam00561, Abhydrolase_1, alpha/beta hydrolase fold.
CD-Length = 224 residues,  99.6% aligned
Score = 79.8 bits (196), Expect = 3e-16







   
Genomic Context:






   
Comment:


















    ReferenceID:6131




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23273




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33799




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3064_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3064
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4945
                           PA0480_tr
                           translation of PA0480
                           265
                           99.24
                           99.62
                           0
                           1330.0
     

     
     
139735
                           gb|AAG03869.1|AE004485_10
                           (AE004485) probable hydrolase [Pseudomonas aeruginosa PAO1]
                           265
                           99.24
                           99.62
                           0
                           1330.0
     

     
     
139736
                           dbj|BAB49603.1|
                           (AP002999) probable beta-ketoadipate enol-lactone hydrolase [Mesorhizobium loti]
                           265
                           65.28
                           76.22
                           2
                           886.0
     

     
     
139739
                           gb|AAG42037.1|AF042281_6
                           (AF042281) 3-oxoadipate enol-lactone hydrolase [Ralstonia eutropha]
                           265
                           50.56
                           60.00
                           5
                           620.0
     

     
     
139738
                           gb|AAL02408.1|
                           (AY044272) 3-oxoadipate enol-lactone hydrolase [Pseudomonas sp. B13]
                           271
                           49.81
                           62.36
                           15
                           629.0
     

     






      

          
GC ORFID: 46066How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0480Glimmer Score: 

          
Start: 6354969Stop: 6355766

          
Length: 798


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0480 translation of PA0480Homolog Bit Score 516.0

          
Other Homologs:  t_PA0231 (ORF: BLASTX 247.0), psyr_15may02_Scaffold7_revised_gene7253 (ORF: BLASTX 226.0), t_PA0480 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCAACCTGTCTTTTCTCGCTACCAGCGATGGCGCCAGCCTCGCCTATCGCCTGGACGGTGCGGCGGAG 
AAACCGCTGCTGGCGCTCTCCAACTCCATCGGTACCACCCTGCACATGTGGGATGCACAACTCCCGGCACTG 
ACCCGGCACTTCCGCGTCCTGCGCTACGACGCCCGTGGCCATGGCGCCTCCAGCGTGCCGCCGGGGCCCTAC 
ACCCTGGCCCGGCTGGGCGAGGACGTACTGGAGCTGCTCGACGCGCTGGAGGTACGGCGCGCGCATTTCCTA 
GGCCTGTCCCTGGGCGGGATCGTCGGCCAGTGGCTGGCGCTGCATGCGCCGCAGCGGATCGAGCGGCTGGTG 
CTGGCCAACACCTCGGCCTGGCTTGGCCCGGCGGCGCAGTGGGACGAGCGCATCGCCGCGGTGCTGCAGGCC 
GAGGACATGAGCGATACCGCCGCGGGCTTCCTCGGCAACTGGTTTCCGCCGGCGCTGCTGGAGCGCGCCGAG 
CCCGTCGTCGAGCGCTTCCGGGCGATGCTCATGGCCACCAACCGGCACGGCCTGGCCGGCTCCTTCGCGGCG 
GTGCGCGATACCGACCTGCGCGCGCAACTGGCGCGGATCGAGCGGCCGACCCTGGTGATCGCAGGGGCGTAC 
GACACGGTCACCGCCGCCAGCCACGGCGAGCTGATCGCCACGTCGATTGCCGGGGCCAGGCTGGTTACGCTG 
CCGGCGGTGCATCTGTCGAACGTCGAGTTCCCGCAGGCGTTCGAAGGCGCGGTGCTGAGCTTTCTCGGCGCA 
GCCTGA