ViewGene
Locus Name:
GeneID:
Location:

GeneID:3063
TrivialName: PA14_65840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65840
PAO1 Ortholog Locus:PA4980
Sequence Length:792
Protein Length:263
Start: 5864821
Stop: 5864030
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08365.1|AE004910_12 (AE004910) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
Identities = 262/263 (99%), Positives = 262/263 (99%)
Sequence:
ATGACTGACCTTTCCCCATTGCAGACGCGGGTCGAAGCCGGGATCGCCTGGCTCGTCCTGAATCGTCCGCAA
CAGCGCAATGCACTGGATATCCCCACCCTGGAGGCCCTGCACGTCCGACTCGATGCCTGCGAGCGCGACCCG
GCAGTGCGCGCTGTGGTGCTCGGCGGCAGCGGACGCAGCTTCTGCGCCGGGGCCGATCTCGCCGAATGGGCG
GCGGCTGAAGCCCGTGGCGAGCTGGAAAGCTATGGCTGGACCGAGGCCGCCCACGCCCTGATGGGGCGCCTG
CACGCCCTCGACAAACCCACAGTCGCCGCCGTCAACGGCAGCGCCGTGGGCGCTGGCATGGACCTGGCGCTG
TGCTGCGATTTCCGCATCGCCGCCGCCTCGGCGCGCTTCAAGGCCGGCTACACCGGCATGGCCTACTGCCCG
GACGCCGGCGCCAGTTGGCATCTGCCACGGCTGCTCGGCAGCGAGGCGGCCAAGCGCCTGCTGTTCCTCGAC
GAAGCCTGGAGCGCGGAGCGAGCCCTGGGTGCCGGACTGGTCGGCGAGGTGGTCGCCGACGAGCGCCTGGTT
GAGGCGGTCGGCGCCTTCGCTGCGCGTCTCGCCAGCGGTCCGACCTTCGCCTTCGCCCAGACCAAGCGCCTG
CTGCGCGACGGCGCCGGGCGCTCGCTGGCCGAGCAGTTGCGGGCCGAGCAGGCCGCCGGGCTGCTCTGCGGG
CGCAGCGAGGATGCCGCCGAGGCGCTGCGCGCCGTGGCCGAGAAACGTTCCCCTCAATTCAGCGGGCGCTAG
Translation:
MTDLSPLQTRVEAGIAWLVLNRPQQRNALDIPTLEALHVRLDACERDPAVRAVVLGGSGRSFCAGADLAEWA
AAEARGELESYGWTEAAHALMGRLHALDKPTVAAVNGSAVGAGMDLALCCDFRIAAASARFKAGYTGMAYCP
DAGASWHLPRLLGSEAAKRLLFLDEAWSAERALGAGLVGEVVADERLVEAVGAFAARLASGPTFAFAQTKRL
LRDGAGRSLAEQLRAEQAAGLLCGRSEDAAEALRAVAEKRSPQFSGR*
AnnotationID:3071GeneID:3063
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 07:07:11
Gene Name:
Confidence Code:3
GeneProduct:putative enoyl-CoA hydratase/isomerase
Cell Localization:()
Synonyms:PA4980
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1024,pfam00378
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69322.1|AE016569_6 (AE016788) enoyl-CoA hydratase/isomerase family protein
           [Pseudomonas putida KT2440]
          Length = 264

 Score =  391 bits (1004), Expect = e-108
 Identities = 193/262 (73%), Positives = 220/262 (83%)






 
Structural Features:
COG1024, CaiD, Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism] 
CD-Length = 257 residues, 100.0% aligned
Score =  181 bits (459), Expect = 1e-46
Identities = 116/261 (44%), Positives = 140/261 (53%), Gaps = 5/261 (1%)

pfam00378, ECH, Enoyl-CoA hydratase/isomerase family. 
CD-Length = 168 residues, 100.0% aligned
Score =  124 bits (314), Expect = 8e-30
Identities = 74/172 (43%), Positives = 101/172 (58%), Gaps = 4/172 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6129




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23271




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35087




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3063_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3063
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4943
                           PA4980_tr
                           translation of PA4980
                           263
                           99.61
                           99.61
                           0
                           1329.0
     

     
     
139730
                           gb|AAG08365.1|AE004910_12
                           (AE004910) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
                           263
                           99.61
                           99.61
                           0
                           1329.0
     

     
     
139731
                           gb|AAN69322.1|AE016569_6
                           (AE016788) enoyl-CoA hydratase/isomerase family protein [Pseudomonas putida KT2440]
                           264
                           73.10
                           83.33
                           1
                           1003.0
     

     
     
4944
                           PA3591_tr
                           translation of PA3591
                           278
                           38.48
                           49.64
                           28
                           367.0
     

     
     
139733
                           gb|AAG06979.1|AE004779_11
                           (AE004779) probable enoyl-CoA hydratase/isomerase [Pseudomonas aeruginosa PAO1]
                           278
                           38.48
                           49.64
                           28
                           367.0
     

     






      

          
GC ORFID: 46065How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4980Glimmer Score: 

          
Start: 5128504Stop: 5127713

          
Length: 792


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4980 translation of PA4980Homolog Bit Score 516.0

          
Other Homologs:  t_PA3591 (ORF: BLASTX 140.0), t_PA4980 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGACCTTTCCCCATTGCAGACGCGGGTCGAAGCCGGGATCGCCTGGCTCGTCCTGAATCGTCCGCAA 
CAGCGCAATGCACTGGATATCCCCACCCTGGAGGCCCTGCACGTCCGACTCGATGCCTGCGAGCGCGACCCG 
GCAGTGCGCGCTGTGGTGCTCGGCGGCAGCGGACGCAGCTTCTGCGCCGGGGCCGATCTCGCCGAATGGGCG 
GCGGCTGAAGCCCGTGGCGAGCTGGAAAGCTATGGCTGGACCGAGGCCGCCCACGCCCTGATGGGGCGCCTG 
CACGCCCTCGACAAACCCACAGTCGCCGCCGTCAACGGCAGCGCCGTGGGCGCTGGCATGGACCTGGCGCTG 
TGCTGCGATTTCCGCATCGCCGCCGCCTCGGCGCGCTTCAAGGCCGGCTACACCGGCATGGCCTACTGCCCG 
GACGCCGGCGCCAGTTGGCATCTGCCACGGCTGCTCGGCAGCGAGGCGGCCAAGCGCCTGCTGTTCCTCGAC 
GAAGCCTGGAGCGCGGAGCGAGCCCTGGGTGCCGGACTGGTCGGCGAGGTGGTCGCCGACGAGCGCCTGGTT 
GAGGCGGTCGGCGCCTTCGCTGCGCGTCTCGCCAGCGGTCCGACCTTCGCCTTCGCCCAGACCAAGCGCCTG 
CTGCGCGACGGCGCCGGGCGCTCGCTGGCCGAGCAGTTGCGGGCCGAGCAGGCCGCCGGGCTGCTCTGCGGG 
CGCAGCGAGGATGCCGCCGAGGCGCTGCGCGCCGTGGCCGAGAAACGTTCCCCTCAATTCAGCGGGCGCTAG