ViewGene
Locus Name:
GeneID:
Location:

GeneID:3062
TrivialName: PA14_63940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63940
PAO1 Ortholog Locus:PA4836
Sequence Length:792
Protein Length:263
Start: 5698327
Stop: 5697536
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08221.1|AE004896_11 (AE004896) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 260/263 (98%), Positives = 262/263 (99%)
Sequence:
ATGCAAGGACGCACACCGCTGCTGGAAACCCTCCGCGAACTGGAATGCGAGATTCGCCTGCTCACCGTCTAT
GCCCGCGAGTGTTGCGGCTGCTACGAGATCCTCAGGCGCAAGCTCGACCGTCTGAGCGGACTGATCGGGGAG
GATTGCAGCCGGGCGCAGTGGCAGGCCGATTCGGACGACCCTGCGTTGCAGGCGCTCGGCCTGCGCCTGCGC
GACGCGGCGGTGCAGGCCCTCTGCGAACTGGAGAAGCACCTTTGCCAGGGCGTGCTACATGAACCCGGCGAG
ATGGGCCGCTACCTGGGTAGCCTGCTGGAATCCATCCGCGGCGAACTCGACAGCGCCGGGATAGATGCCGAT
GCACGGGTCCTGTTCGTCGGCTCCGGTGCCCTGCCGACCTCGGCCCTGGTGCTGGCGCGGGAGGTCGGCGCA
CATTTGTGCTGCCTGGACATCGACGAAGAGGCCCTGGGCTATGCCCGCGAGATCGCCCGCTGCCAGGGGCTG
GAGGCGCGCATGCAGTTTTCCTCGCTGCCGCCGGCGGAACTGGCGTTTTCCCGCGATGCCACGCATTTCCTG
ATCGCTTCGCTGGTGCAGCAGAAAAGCGCGGTACTGGCGCAGATCCGCCAGGTCATGCGCGCCGACGCCAAG
GTCCTGCTGCGTCACGGCAGCGGCATCAAGGGACTGTTCAACTACCCGGTTGAGCCGGCCGAACTGGAGGGC
TGGCAGGTTTGCGCGGAGCGGGTCAGCCAGCCGCTGTACGACACCCTGATCCTGGAGAAGGCCGGTCGATGA
Translation:
MQGRTPLLETLRELECEIRLLTVYARECCGCYEILRRKLDRLSGLIGEDCSRAQWQADSDDPALQALGLRLR
DAAVQALCELEKHLCQGVLHEPGEMGRYLGSLLESIRGELDSAGIDADARVLFVGSGALPTSALVLAREVGA
HLCCLDIDEEALGYAREIARCQGLEARMQFSSLPPAELAFSRDATHFLIASLVQQKSAVLAQIRQVMRADAK
VLLRHGSGIKGLFNYPVEPAELEGWQVCAERVSQPLYDTLILEKAGR*
AnnotationID:3070GeneID:3062
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 07:07:26
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4836
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6127




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23269




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35205




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3062_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3062
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4942
                           PA4836_tr
                           translation of PA4836
                           263
                           98.85
                           99.61
                           0
                           1329.0
     

     
     
139729
                           gb|AAG08221.1|AE004896_11
                           (AE004896) hypothetical protein PA4836 [Pseudomonas aeruginosa PAO1]
                           263
                           98.85
                           99.61
                           0
                           1329.0
     

     






      

          
GC ORFID: 46064How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4836Glimmer Score: 

          
Start: 4962007Stop: 4961216

          
Length: 792


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4836 translation of PA4836Homolog Bit Score 516.0

          
Other Homologs:  t_PA4836 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGGACGCACACCGCTGCTGGAAACCCTCCGCGAACTGGAATGCGAGATTCGCCTGCTCACCGTCTAT 
GCCCGCGAGTGTTGCGGCTGCTACGAGATCCTCAGGCGCAAGCTCGACCGTCTGAGCGGACTGATCGGGGAG 
GATTGCAGCCGGGCGCAGTGGCAGGCCGATTCGGACGACCCTGCGTTGCAGGCGCTCGGCCTGCGCCTGCGC 
GACGCGGCGGTGCAGGCCCTCTGCGAACTGGAGAAGCACCTTTGCCAGGGCGTGCTACATGAACCCGGCGAG 
ATGGGCCGCTACCTGGGTAGCCTGCTGGAATCCATCCGCGGCGAACTCGACAGCGCCGGGATAGATGCCGAT 
GCACGGGTCCTGTTCGTCGGCTCCGGTGCCCTGCCGACCTCGGCCCTGGTGCTGGCGCGGGAGGTCGGCGCA 
CATTTGTGCTGCCTGGACATCGACGAAGAGGCCCTGGGCTATGCCCGCGAGATCGCCCGCTGCCAGGGGCTG 
GAGGCGCGCATGCAGTTTTCCTCGCTGCCGCCGGCGGAACTGGCGTTTTCCCGCGATGCCACGCATTTCCTG 
ATCGCTTCGCTGGTGCAGCAGAAAAGCGCGGTACTGGCGCAGATCCGCCAGGTCATGCGCGCCGACGCCAAG 
GTCCTGCTGCGTCACGGCAGCGGCATCAAGGGACTGTTCAACTACCCGGTTGAGCCGGCCGAACTGGAGGGC 
TGGCAGGTTTGCGCGGAGCGGGTCAGCCAGCCGCTGTACGACACCCTGATCCTGGAGAAGGCCGGTCGATGA