ViewGene
Locus Name:
GeneID:
Location:

GeneID:3060
TrivialName: PA14_26400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_26400
PAO1 Ortholog Locus:PA2912
Sequence Length:774
Protein Length:257
Start: 2301301
Stop: 2300528
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06300.1|AE004717_6 (AE004717) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 256/257 (99%), Positives = 256/257 (99%)
Sequence:
ATGTCGTCCCTTCACCTCGATGCCCTGCACTGGTCGCCCGACGCCTCCACCGAGTTGCTGCGCGGCGTGCAC
CTGGAAGTCCCGGCCGGCAGCTTCGTCGGCCTGATCGGCCCCAACGGCAGCGGCAAGACCAGCCTGCTGCGC
TGCGCCTTCCGCTATGCGCGACCGCAGCGCGGCCGGGTGGTGCTCGACGGCGACGACCTCTGGCGCCAGCCG
CCGCGCTGGGCCGCCCGGCGCATCGCGGTGGTGTTGCAGGAATTCCCCGAGGACTTCGGCCTCGCCGTCGAG
GACGTGGTCGCCATGGGCCGCACGCCGCACAAGGGCCTGTTCGACGGCCACGGCGCGGACGACCGCCAGCGG
GTCCGCCAGGCGCTGCTCCAGGTCGGTCTCGAAGGGCGTGCCGCGAGCCCCTTCGCCAGCCTCTCCGGTGGC
GAGAAGCAGCGCGCCCTGCTGGCTCGCGCGCTGGTCCAGGAACCGCGCCTGCTGATCCTCGACGAACCGACC
AACCACCTCGACCCGCGCTACCAGCTGGAGCTTCTGCGCCTGCTGCGCGGCCTCGGCCTGAGCACCCTGGCG
AGCTTCCACGACCTCAACCTGGCGGCGGCCTTCTGCGACCGCCTCTACGTGCTCGACGGCGGGCGCATCGTC
GCCCAGGGCACGCCGACCGAGGTGCTCGACGCCGACCTGCTGTGGCGGGTGTTCGGCGTCCGCGCCCTGGTC
GACCGCCACCCCCTCGCCGACCACCCGCGCCTGACCTGGATTACCCAAGCATGA
Translation:
MSSLHLDALHWSPDASTELLRGVHLEVPAGSFVGLIGPNGSGKTSLLRCAFRYARPQRGRVVLDGDDLWRQP
PRWAARRIAVVLQEFPEDFGLAVEDVVAMGRTPHKGLFDGHGADDRQRVRQALLQVGLEGRAASPFASLSGG
EKQRALLARALVQEPRLLILDEPTNHLDPRYQLELLRLLRGLGLSTLASFHDLNLAAAFCDRLYVLDGGRIV
AQGTPTEVLDADLLWRVFGVRALVDRHPLADHPRLTWITQA*
AnnotationID:3068GeneID:3060
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 07:07:12
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:PA2912
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative putative iron transport protein, ATP-binding component
Functional Category Confidence Code:5
COGs:COG1120,COG4559,COG4604
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58980.1| (AE016876) iron-compound ABC transporter, ATP-binding protein,
           putative [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 259

 Score =  311 bits (797), Expect = 2e-84
 Identities = 153/257 (59%), Positives = 190/257 (73%), Gaps = 6/257 (2%)

>gb|AAN54106.1|AE015548_3 (AE015548) iron-compound ABC transporter, ATP-binding protein,
           putative [Shewanella oneidensis MR-1]
          Length = 285

 Score =  249 bits (635), Expect = 1e-65
 Identities = 124/251 (49%), Positives = 175/251 (69%), Gaps = 1/251 (0%)






 
Structural Features:
COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, 
ATPase components 
[Inorganic ion transport and metabolism / Coenzyme metabolism]
CD-Length = 258 residues,  97.3% aligned
Score =  277 bits (711), Expect = 7e-76
Identities = 110/252 (43%), Positives = 152/252 (60%), Gaps = 5/252 (1%)

COG4559, ABC-type_hemin_transport_system, ABC-type hemin transport system, 
ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 259 residues,  93.4% aligned
Score =  187 bits (476), Expect = 1e-48
Identities = 100/244 (40%), Positives = 132/244 (54%), Gaps = 11/244 (4%)

COG4604, CeuD, ABC-type enterochelin transport system, ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 252 residues,  87.7% aligned
Score =  148 bits (374), Expect = 7e-37
Identities = 70/224 (31%), Positives = 129/224 (57%), Gaps = 8/224 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6123




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23265




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36146




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3060_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3060
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4938
                           PA2912_tr
                           translation of PA2912
                           257
                           99.61
                           99.61
                           0
                           1328.0
     

     
     
139545
                           gb|AAG06300.1|AE004717_6
                           (AE004717) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           257
                           99.61
                           99.61
                           0
                           1328.0
     

     
     
139547
                           gb|AAQ59236.1|
                           (AE016915) probable iron transport system ATP-binding protein [Chromobacterium violaceum ATCC 12472]
                           263
                           60.45
                           68.82
                           9
                           771.0
     

     
     
139546
                           gb|AAO58980.1|
                           (AE016876) iron-compound ABC transporter, ATP-binding protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           263
                           58.17
                           72.24
                           10
                           799.0
     

     
     
139550
                           emb|CAB94640.1|
                           (AL939130) putative iron transport protein, ATP-binding component. [Streptomyces coelicolor A3(2)]
                           268
                           47.76
                           60.07
                           21
                           562.0
     

     






      

          
GC ORFID: 46062How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2912Glimmer Score: 

          
Start: 2652624Stop: 2653397

          
Length: 774


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2912 translation of PA2912Homolog Bit Score 516.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2945 (ORF: BLASTX 308.0), psyr_15may02_Scaffold11_revised_gene1898 (ORF: BLASTX 165.0), t_PA4706 (ORF: BLASTX 152.0), t_PA2912 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGTCCCTTCACCTCGATGCCCTGCACTGGTCGCCCGACGCCTCCACCGAGTTGCTGCGCGGCGTGCAC 
CTGGAAGTCCCGGCCGGCAGCTTCGTCGGCCTGATCGGCCCCAACGGCAGCGGCAAGACCAGCCTGCTGCGC 
TGCGCCTTCCGCTATGCGCGACCGCAGCGCGGCCGGGTGGTGCTCGACGGCGACGACCTCTGGCGCCAGCCG 
CCGCGCTGGGCCGCCCGGCGCATCGCGGTGGTGTTGCAGGAATTCCCCGAGGACTTCGGCCTCGCCGTCGAG 
GACGTGGTCGCCATGGGCCGCACGCCGCACAAGGGCCTGTTCGACGGCCACGGCGCGGACGACCGCCAGCGG 
GTCCGCCAGGCGCTGCTCCAGGTCGGTCTCGAAGGGCGTGCCGCGAGCCCCTTCGCCAGCCTCTCCGGTGGC 
GAGAAGCAGCGCGCCCTGCTGGCTCGCGCGCTGGTCCAGGAACCGCGCCTGCTGATCCTCGACGAACCGACC 
AACCACCTCGACCCGCGCTACCAGCTGGAGCTTCTGCGCCTGCTGCGCGGCCTCGGCCTGAGCACCCTGGCG 
AGCTTCCACGACCTCAACCTGGCGGCGGCCTTCTGCGACCGCCTCTACGTGCTCGACGGCGGGCGCATCGTC 
GCCCAGGGCACGCCGACCGAGGTGCTCGACGCCGACCTGCTGTGGCGGGTGTTCGGCGTCCGCGCCCTGGTC 
GACCGCCACCCCCTCGCCGACCACCCGCGCCTGACCTGGATTACCCAAGCATGA