ViewGene
Locus Name:
GeneID:
Location:

GeneID:306
TrivialName: PA14_51170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51170
PAO1 Ortholog Locus:PA1017
Sequence Length:2148
Protein Length:715
Start: 4549001
Stop: 4546854
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04406.1|AE004534_4 (AE004534) pimeloyl-CoA synthetase [Pseudomonas aeruginosa PAO1]
Identities = 713/715 (99%), Positives = 714/715 (99%)
Sequence:
ATGTCAGCGAACCACTCGCAACAGCTCATCGACGCTCCCCGTTTCGCCAGTCTTACTCCATTGATCGAACCA
CGCTCGGTCGCGGTGATCGGCGCTTCCAGCGACCCGACCCGCATCGGTGGCCGTCCCATCGCCTACATGCTG
CGCCATGGCTATGCCGGGCAAATCCTCCCGGTCAATCCGAATCGTGCTGAAATCCAGGGGCTGCCGGCCTTC
GCCAGCGTTGCGGAGCTGCCGCAGGCACCGGACGTGGCCATTGTCGCGGTGCCTGCGCCTCAGGTGCTGGAG
ACCGTCCGGGCGCTGGGCCGCCAGGGGGCGCGCAGTGCCATCGTGTTCTCTTCCGGATTCAGCGAGGTCGGC
GAGGCCGGCGCGGCGATGCAGGATGCGGTGGTAGCCGCTGCCCGCGAGCACGGTATGCGCCTGCTCGGTCCG
AATGCGCTCGGCGCGTTCAACAGTAACCTGGGTTATTACGCGTTCTTCTCCACCAGCCTGGAACGTGGCGTA
CCGCTGCCCGGCCGGGTAGGCATCGCCACCCAGTCCGGTGCCTACGGCGCGCACCTGCTCGGCATGGCGCGC
CAGCGGCGCCTGGGAACCCCTATCTGCGTGGCCACCGGTAACGAGGCCGACGTCACCCTGGGCGACAGCATC
GGTTGGCTGGTGGAGTCGCCGGAGATCGACGTGGTGATGGCCTACGCCGAATCCATCCGCAACGTCGACAGC
TTCCTCGCCGCCCTGGAGGCCGCGCATCGCGCCGGCAAGCCGGTGATCCTGCACAAGGTCGGGCGCAGCGCC
CTGGGTAGCCGCGCGGCGCTGTCCCACACCGCTTCGCTGGCCGGCGACGACAAGGTGCTGGACGCCGTGCTG
GGCGACTATGCGGTGATCCGCGCCAGGACCACCGAGGAACTGATGGACATCGCCTACCTCGCCACCCGGCGT
ATCTATCCGGTGGGCAACAGCCTCGGCATGATCACCGTCAGCGGCGGCGCCGGGATCATCGTCAGCGATGTC
GCCGAGGAAGTCGGCCTGCCGATGCCGCCGATGCCGGACATGGCCCAGGAGCGGCTGAAGGCACGGCTGTCC
TTCGCTTCGCCGATCAACCCGGTGGACTGCACCGCGCAGGCCCTGAACGACCTGACGCTGGTGCGCGACTTT
ACCGAGTCGATGGTGGTCGACGGTGGCTACCGTTCGCTGCTCGCCTTCTTCACCCAGGCCGGCACCGCCGCC
TCCATCGGCGCGCGTCTGGCCGAGCAGTTCCGGCGGATCAAGGAGGCTTATCCCGAGCGTCTGTTCGTGGTC
TCGGTGATGGGCGAGGGGGAGGAGCTGGCACCCTACGAGGAGGCCGGCTTCGCACTGTTCGAAGACCCCACC
CGGGCGGTAGTGGCGATCCAGGCCATGGGGCGGCTCGGCGAAGCCTTCGCCCGGCCGTTGCGCCTGCGCCGG
CCTGCCGGCGGGCTACAGTTGCCCGCCTCCACGCCCGGCGAAGCCGAGGCCAAGCGCCTGCTGGCGCGCGCC
GGTATCGAGTCCGCCGCCGAGGCGGTGCTGGGCAGTGCCGAAGAGGCGGTTGCCTTCGCCGAGGGCATCGGA
TACCCGGTGGTGCTGAAGCTCGCCTCGGCGGACATCCAGCACAAGTCGGAAATCGGCGGCGTGCTGCTTGGC
GTAAGCGATGCGGACGCGGTACGCGCCGGTTTCCAACTGCTCCTGCGCCGGGCCGCCGAGAAGGCGCCGCAG
GCGCGTCTCGATGGCGTCCTGGTGGCGCGTCAGCTGCAGGGTGGGGTGGAGTGCTTCATGGGGATCCAGCGC
GATCCGCTGTTCGGCCCGGTGGCGCTGTTCGGCCTGGGCGGGATCTTCGTCGAGGTGCTGCAGGACGTGGTG
TTCCGCCGCTGCCCGTTCGAGGTCGACGAAGCCGAGGCGATGATCCGTAGCATCAGAGGCGCGCCGCTCCTG
CTCGGCGCGCGTGGCCGGCCGCGGGCCGACGTCGCGGCGCTGGCACGGCTGCTGTCGAATCTCTCGCGGTTC
GCCTGGGAGGCGGGAGAGCGCTTGCGCTCGGTGGACCTCAACCCGGTCATCGCCTTGCCGGAGGGCCAGGGC
GCCTGGGCGGTGGATGCGGTGCTGGAAGTCGAGGAGGTGGCCGATGGCGCTCGATCCTGA
Translation:
MSANHSQQLIDAPRFASLTPLIEPRSVAVIGASSDPTRIGGRPIAYMLRHGYAGQILPVNPNRAEIQGLPAF
ASVAELPQAPDVAIVAVPAPQVLETVRALGRQGARSAIVFSSGFSEVGEAGAAMQDAVVAAAREHGMRLLGP
NALGAFNSNLGYYAFFSTSLERGVPLPGRVGIATQSGAYGAHLLGMARQRRLGTPICVATGNEADVTLGDSI
GWLVESPEIDVVMAYAESIRNVDSFLAALEAAHRAGKPVILHKVGRSALGSRAALSHTASLAGDDKVLDAVL
GDYAVIRARTTEELMDIAYLATRRIYPVGNSLGMITVSGGAGIIVSDVAEEVGLPMPPMPDMAQERLKARLS
FASPINPVDCTAQALNDLTLVRDFTESMVVDGGYRSLLAFFTQAGTAASIGARLAEQFRRIKEAYPERLFVV
SVMGEGEELAPYEEAGFALFEDPTRAVVAIQAMGRLGEAFARPLRLRRPAGGLQLPASTPGEAEAKRLLARA
GIESAAEAVLGSAEEAVAFAEGIGYPVVLKLASADIQHKSEIGGVLLGVSDADAVRAGFQLLLRRAAEKAPQ
ARLDGVLVARQLQGGVECFMGIQRDPLFGPVALFGLGGIFVEVLQDVVFRRCPFEVDEAEAMIRSIRGAPLL
LGARGRPRADVAALARLLSNLSRFAWEAGERLRSVDLNPVIALPEGQGAWAVDAVLEVEEVADGARS*
AnnotationID:316GeneID:306
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 16:04:18
Gene Name:pauA
Confidence Code:2
GeneProduct:pimeloyl-CoA synthetase
Cell Localization:()
Synonyms:PA1017
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1042
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion]
        CD-Length = 598 residues, 100.0% aligned
        Score =  414 bits (1066), Expect = 2e-116






   
Genomic Context:






   
Comment:


















    ReferenceID:615




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17006




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA1017_CDS.cgi


    		




 
URL:

















    ReferenceID:17757




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32180




  
Author/Investigator(s):
        Binieda A, Fuhrmann M, Lehner B, Rey-Berthod C, Frutiger-Hughes S, Hughes G, Shaw NM.





  
Title:
        Purification, characterization, DNA sequence and cloning of a pimeloyl-CoA synthetase from Pseudomonas mendocina 35.





  
PubMed:
        99289323


MedLine:
        




    
Source:
Biochem J. 1999 Jun 15;340 ( Pt 3):793-801.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:306
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
498
                           PA1017_tr
                           translation of PA1017
                           715
                           99.72
                           99.86
                           0
                           3544.0
     

     
     
25219
                           gb|AAG04406.1|AE004534_4
                           (AE004534) pimeloyl-CoA synthetase [Pseudomonas aeruginosa PAO1]
                           715
                           99.72
                           99.86
                           0
                           3544.0
     

     
     
25220
                           emb|CAA10043.1|
                           (AJ012480) pimeloyl-CoA synthetase [Pseudomonas mendocina]
                           715
                           82.79
                           89.65
                           4
                           2955.0
     

     
     
25221
                           dbj|BAC51641.1|
                           (AP005958) bll6376 [Bradyrhizobium japonicum USDA 110]
                           757
                           41.74
                           58.65
                           49
                           1497.0
     

     
     
25225
                           dbj|BAC48711.1|
                           (AP005947) blr3446 [Bradyrhizobium japonicum USDA 110]
                           732
                           39.89
                           55.87
                           42
                           1298.0
     

     






      

          
GC ORFID: 43308How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1017Glimmer Score: 

          
Start: 404907Stop: 407054

          
Length: 2148


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1017 translation of PA1017Homolog Bit Score 1369.0

          
Other Homologs:  t_PA1017 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCAGCGAACCACTCGCAACAGCTCATCGACGCTCCCCGTTTCGCCAGTCTTACTCCATTGATCGAACCA 
CGCTCGGTCGCGGTGATCGGCGCTTCCAGCGACCCGACCCGCATCGGTGGCCGTCCCATCGCCTACATGCTG 
CGCCATGGCTATGCCGGGCAAATCCTCCCGGTCAATCCGAATCGTGCTGAAATCCAGGGGCTGCCGGCCTTC 
GCCAGCGTTGCGGAGCTGCCGCAGGCACCGGACGTGGCCATTGTCGCGGTGCCTGCGCCTCAGGTGCTGGAG 
ACCGTCCGGGCGCTGGGCCGCCAGGGGGCGCGCAGTGCCATCGTGTTCTCTTCCGGATTCAGCGAGGTCGGC 
GAGGCCGGCGCGGCGATGCAGGATGCGGTGGTAGCCGCTGCCCGCGAGCACGGTATGCGCCTGCTCGGTCCG 
AATGCGCTCGGCGCGTTCAACAGTAACCTGGGTTATTACGCGTTCTTCTCCACCAGCCTGGAACGTGGCGTA 
CCGCTGCCCGGCCGGGTAGGCATCGCCACCCAGTCCGGTGCCTACGGCGCGCACCTGCTCGGCATGGCGCGC 
CAGCGGCGCCTGGGAACCCCTATCTGCGTGGCCACCGGTAACGAGGCCGACGTCACCCTGGGCGACAGCATC 
GGTTGGCTGGTGGAGTCGCCGGAGATCGACGTGGTGATGGCCTACGCCGAATCCATCCGCAACGTCGACAGC 
TTCCTCGCCGCCCTGGAGGCCGCGCATCGCGCCGGCAAGCCGGTGATCCTGCACAAGGTCGGGCGCAGCGCC 
CTGGGTAGCCGCGCGGCGCTGTCCCACACCGCTTCGCTGGCCGGCGACGACAAGGTGCTGGACGCCGTGCTG 
GGCGACTATGCGGTGATCCGCGCCAGGACCACCGAGGAACTGATGGACATCGCCTACCTCGCCACCCGGCGT 
ATCTATCCGGTGGGCAACAGCCTCGGCATGATCACCGTCAGCGGCGGCGCCGGGATCATCGTCAGCGATGTC 
GCCGAGGAAGTCGGCCTGCCGATGCCGCCGATGCCGGACATGGCCCAGGAGCGGCTGAAGGCACGGCTGTCC 
TTCGCTTCGCCGATCAACCCGGTGGACTGCACCGCGCAGGCCCTGAACGACCTGACGCTGGTGCGCGACTTT 
ACCGAGTCGATGGTGGTCGACGGTGGCTACCGTTCGCTGCTCGCCTTCTTCACCCAGGCCGGCACCGCCGCC 
TCCATCGGCGCGCGTCTGGCCGAGCAGTTCCGGCGGATCAAGGAGGCTTATCCCGAGCGTCTGTTCGTGGTC 
TCGGTGATGGGCGAGGGGGAGGAGCTGGCACCCTACGAGGAGGCCGGCTTCGCACTGTTCGAAGACCCCACC 
CGGGCGGTAGTGGCGATCCAGGCCATGGGGCGGCTCGGCGAAGCCTTCGCCCGGCCGTTGCGCCTGCGCCGG 
CCTGCCGGCGGGCTACAGTTGCCCGCCTCCACGCCCGGCGAAGCCGAGGCCAAGCGCCTGCTGGCGCGCGCC 
GGTATCGAGTCCGCCGCCGAGGCGGTGCTGGGCAGTGCCGAAGAGGCGGTTGCCTTCGCCGAGGGCATCGGA 
TACCCGGTGGTGCTGAAGCTCGCCTCGGCGGACATCCAGCACAAGTCGGAAATCGGCGGCGTGCTGCTTGGC 
GTAAGCGATGCGGACGCGGTACGCGCCGGTTTCCAACTGCTCCTGCGCCGGGCCGCCGAGAAGGCGCCGCAG 
GCGCGTCTCGATGGCGTCCTGGTGGCGCGTCAGCTGCAGGGTGGGGTGGAGTGCTTCATGGGGATCCAGCGC 
GATCCGCTGTTCGGCCCGGTGGCGCTGTTCGGCCTGGGCGGGATCTTCGTCGAGGTGCTGCAGGACGTGGTG 
TTCCGCCGCTGCCCGTTCGAGGTCGACGAAGCCGAGGCGATGATCCGTAGCATCAGAGGCGCGCCGCTCCTG 
CTCGGCGCGCGTGGCCGGCCGCGGGCCGACGTCGCGGCGCTGGCACGGCTGCTGTCGAATCTCTCGCGGTTC 
GCCTGGGAGGCGGGAGAGCGCTTGCGCTCGGTGGACCTCAACCCGGTCATCGCCTTGCCGGAGGGCCAGGGC 
GCCTGGGCGGTGGATGCGGTGCTGGAAGTCGAGGAGGTGGCCGATGGCGCTCGATCCTGA