ViewGene
Locus Name:
GeneID:
Location:

GeneID:3059
TrivialName: PA14_40940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40940
PAO1 Ortholog Locus:PA1824
Sequence Length:780
Protein Length:259
Start: 3650390
Stop: 3651169
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05213.1|AE004608_12 (AE004608) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 255/259 (98%), Positives = 257/259 (99%)
Sequence:
ATGCCTTTCGAACTCGCGATAGACCCCAGCACCCTGATCATCCTGGCCGTGGTGGCCTTTCTCGCCGGCTTC
ATCGACGCCATCGCCGGCGGCGGCGGCCTGTTGACCATCCCTGCGCTGCTCACCGCCGGGGTCCCGCCGCAC
CTGGCGCTGGGTACCAACAAGCTGAGCTCGACCTTCGGTGCGGCGACCGCCAGCTACACCTTCTACCGGCGC
AAGCTGTTCCATCCCGGGAAGTGGCGCAACGCTCTGCTCGCCACCGCGATCGGCGCCGCCATAGGCGCCTGG
GCGGCTCACCTGCTGCCCGCCGAGTGGCTGAACCGGATGCTCCCGGTGGTGGTATTCACCTGCGGCCTCTAC
ATGCTCTTCGGCGGCACGCCGAAGGCGCCGCTGGACGCCGATACGCCGGTCGGACGCAAGCGCCAGTGGCCG
CAGGGCCTCGCCCTGGGCTTCTACGACGGCGTGGCGGGACCGGGCACCGGAGCGTTCTGGACCGTCAGCTCG
CTGCTCATGTACCCGCTGGACCTGGTCCGCGCCAGCGGTGTGGCGCGGAGCATGAACTTCGTCAGCAACATA
GTGGCGCTGGCGGTGTTCGTCGCCTCCGGCCAGGTGATCTGGTTGCTCGGCCTGTGCATGGGTGCGTCGCTG
ATGGTCGGCGCCTATTTCGGCGCGCGCACCGCCATCGGCGGTGGGGCGAAGTTCATTCGCCCGGTGTTCATC
CTGGTGGTCCTGGCGCTGACCGCGCGGCTAGCCTGGCAGCACTGGTTCAGCGGCGCCTGA
Translation:
MPFELAIDPSTLIILAVVAFLAGFIDAIAGGGGLLTIPALLTAGVPPHLALGTNKLSSTFGAATASYTFYRR
KLFHPGKWRNALLATAIGAAIGAWAAHLLPAEWLNRMLPVVVFTCGLYMLFGGTPKAPLDADTPVGRKRQWP
QGLALGFYDGVAGPGTGAFWTVSSLLMYPLDLVRASGVARSMNFVSNIVALAVFVASGQVIWLLGLCMGASL
MVGAYFGARTAIGGGAKFIRPVFILVVLALTARLAWQHWFSGA*
AnnotationID:3067GeneID:3059
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 19:07:03
Gene Name:
Confidence Code:3
GeneProduct:putative membrain protein
Cell Localization:()
Synonyms:PA1824
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative permease
Functional Category Confidence Code:5
COGs:COG0730
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56222.1| (AE016865) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 259

 Score =  421 bits (1081), Expect = e-117
 Identities = 202/259 (77%), Positives = 233/259 (89%)

>gb|AAO09080.1|AE016798_240 (AE016798) Predicted permease [Vibrio vulnificus CMCP6]
          Length = 262

 Score =  176 bits (447), Expect = 9e-44
 Identities = 105/257 (40%), Positives = 148/257 (57%), Gaps = 14/257 (5%)








 
Structural Features:
COG0730, COG0730, Predicted permeases 
CD-Length = 258 residues,  99.2% aligned
Score = 94.7 bits (235), Expect = 1e-20
Identities = 93/257 (36%), Positives = 131/257 (50%), Gaps = 7/257 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6121




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23263




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37110




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3059_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3059
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4937
                           PA1824_tr
                           translation of PA1824
                           259
                           98.45
                           99.22
                           0
                           1329.0
     

     
     
139531
                           gb|AAG05213.1|AE004608_12
                           (AE004608) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           259
                           98.45
                           99.22
                           0
                           1329.0
     

     
     
139532
                           gb|AAO56222.1|
                           (AE016865) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           259
                           77.99
                           89.96
                           0
                           1081.0
     

     
     
139533
                           gb|AAO10500.1|AE016804_10
                           (AE016804) Conserved hypothetical protein [Vibrio vulnificus CMCP6]
                           263
                           50.57
                           72.24
                           7
                           719.0
     

     
     
139534
                           dbj|BAC95094.1|
                           (AP005339) predicted permease [Vibrio vulnificus YJ016]
                           263
                           50.57
                           72.24
                           7
                           719.0
     

     






      

          
GC ORFID: 46061How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1824Glimmer Score: 

          
Start: 1303520Stop: 1302741

          
Length: 780


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1824 translation of PA1824Homolog Bit Score 516.0

          
Other Homologs:  t_PA1824 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTTTCGAACTCGCGATAGACCCCAGCACCCTGATCATCCTGGCCGTGGTGGCCTTTCTCGCCGGCTTC 
ATCGACGCCATCGCCGGCGGCGGCGGCCTGTTGACCATCCCTGCGCTGCTCACCGCCGGGGTCCCGCCGCAC 
CTGGCGCTGGGTACCAACAAGCTGAGCTCGACCTTCGGTGCGGCGACCGCCAGCTACACCTTCTACCGGCGC 
AAGCTGTTCCATCCCGGGAAGTGGCGCAACGCTCTGCTCGCCACCGCGATCGGCGCCGCCATAGGCGCCTGG 
GCGGCTCACCTGCTGCCCGCCGAGTGGCTGAACCGGATGCTCCCGGTGGTGGTATTCACCTGCGGCCTCTAC 
ATGCTCTTCGGCGGCACGCCGAAGGCGCCGCTGGACGCCGATACGCCGGTCGGACGCAAGCGCCAGTGGCCG 
CAGGGCCTCGCCCTGGGCTTCTACGACGGCGTGGCGGGACCGGGCACCGGAGCGTTCTGGACCGTCAGCTCG 
CTGCTCATGTACCCGCTGGACCTGGTCCGCGCCAGCGGTGTGGCGCGGAGCATGAACTTCGTCAGCAACATA 
GTGGCGCTGGCGGTGTTCGTCGCCTCCGGCCAGGTGATCTGGTTGCTCGGCCTGTGCATGGGTGCGTCGCTG 
ATGGTCGGCGCCTATTTCGGCGCGCGCACCGCCATCGGCGGTGGGGCGAAGTTCATTCGCCCGGTGTTCATC 
CTGGTGGTCCTGGCGCTGACCGCGCGGCTAGCCTGGCAGCACTGGTTCAGCGGCGCCTGA