ViewGene
Locus Name:
GeneID:
Location:

GeneID:3058
TrivialName: PA14_51010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51010
PAO1 Ortholog Locus:PA1030
Sequence Length:756
Protein Length:251
Start: 4533295
Stop: 4532540
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04419.1|AE004535_6 (AE004535) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 248/251 (98%), Positives = 250/251 (99%)
Sequence:
GTGAGCGAGATCTGGCGACAGTGCAAGGGTGAGCGGCATGTCCGACCGCTCCAGGGGCGGCTGGTGCGGTTG
GTGGAGAGCCAGGAGCAGGTGGCGACCCTGCAATTGGTCGACACCCTGGAAGAACAGGCGTTGCTCGAGGAA
CTGCTCGAGTCGAGCAAGCCGCCGGTGCCGGCGGATGCCGAGCCATTGCATTACCTGTTGAAGACCCCGTTC
CGTTATCCGCCCTTGCGTTGGGGGTCGCGGTTTGGCCGTCGTCACGAGCCAAGCCTGTTCTACGCCGCGTTG
AAGCTGGAAACGGCCATGGCCGAAAGCGCGTATTACCGTTGTGTCCTGTGGAGTGGCATGGCGGTGCCGCCA
CCGAGCGGGAGGATTCTGTCCGAGCACGCTTCGTTCGAGGCGGGCTGGAAGGTGGAGCGGGGAATCCGTCTG
CAGGCGCCGCCTTTCTCCGATCACGAGGCTGCGCTGACCGACATCGCCGACTACCGCGCTCCCCAGGAACTG
GGAAGTGCCATGCGCAGCGCCGGGGTGCAGGCATTCGAATACCGTTCGGCGCGTTGCCCGGAGCGCGGCTGC
AATGTCGCCCTGTTCACGCCCGCGGCCTTCACCGAAAAGCGTCCTCGCAACCTGACGCCCTGGCTGTGCGAA
ACCACGGCCGGTTACGTGGCCTTCAAGCCGGCGCATGTGCCGGGGGCGCCGAAAATCTTCTCCTGGGAGCTG
TTCCTGGTGGACGGAAAGTTGCCGCATCCGGCGTGA
Translation:
MSEIWRQCKGERHVRPLQGRLVRLVESQEQVATLQLVDTLEEQALLEELLESSKPPVPADAEPLHYLLKTPF
RYPPLRWGSRFGRRHEPSLFYAALKLETAMAESAYYRCVLWSGMAVPPPSGRILSEHASFEAGWKVERGIRL
QAPPFSDHEAALTDIADYRAPQELGSAMRSAGVQAFEYRSARCPERGCNVALFTPAAFTEKRPRNLTPWLCE
TTAGYVAFKPAHVPGAPKIFSWELFLVDGKLPHPA*
AnnotationID:3066GeneID:3058
AnnotatorUID: danlee
Modification Date/Time: 2004-05-18 17:05:51
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1030
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14733




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23261




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3058
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4936
                           PA1030_tr
                           translation of PA1030
                           251
                           98.80
                           99.60
                           0
                           1328.0
     

     
     
139530
                           gb|AAG04419.1|AE004535_6
                           (AE004535) hypothetical protein PA1030 [Pseudomonas aeruginosa PAO1]
                           251
                           98.40
                           99.60
                           0
                           1325.0
     

     






      

          
GC ORFID: 46060How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1030Glimmer Score: 

          
Start: 420613Stop: 421368

          
Length: 756


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1030 translation of PA1030Homolog Bit Score 516.0

          
Other Homologs:  t_PA1030 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGCGAGATCTGGCGACAGTGCAAGGGTGAGCGGCATGTCCGACCGCTCCAGGGGCGGCTGGTGCGGTTG 
GTGGAGAGCCAGGAGCAGGTGGCGACCCTGCAATTGGTCGACACCCTGGAAGAACAGGCGTTGCTCGAGGAA 
CTGCTCGAGTCGAGCAAGCCGCCGGTGCCGGCGGATGCCGAGCCATTGCATTACCTGTTGAAGACCCCGTTC 
CGTTATCCGCCCTTGCGTTGGGGGTCGCGGTTTGGCCGTCGTCACGAGCCAAGCCTGTTCTACGCCGCGTTG 
AAGCTGGAAACGGCCATGGCCGAAAGCGCGTATTACCGTTGTGTCCTGTGGAGTGGCATGGCGGTGCCGCCA 
CCGAGCGGGAGGATTCTGTCCGAGCACGCTTCGTTCGAGGCGGGCTGGAAGGTGGAGCGGGGAATCCGTCTG 
CAGGCGCCGCCTTTCTCCGATCACGAGGCTGCGCTGACCGACATCGCCGACTACCGCGCTCCCCAGGAACTG 
GGAAGTGCCATGCGCAGCGCCGGGGTGCAGGCATTCGAATACCGTTCGGCGCGTTGCCCGGAGCGCGGCTGC 
AATGTCGCCCTGTTCACGCCCGCGGCCTTCACCGAAAAGCGTCCTCGCAACCTGACGCCCTGGCTGTGCGAA 
ACCACGGCCGGTTACGTGGCCTTCAAGCCGGCGCATGTGCCGGGGGCGCCGAAAATCTTCTCCTGGGAGCTG 
TTCCTGGTGGACGGAAAGTTGCCGCATCCGGCGTGA