ViewGene
Locus Name:
GeneID:
Location:

GeneID:3056
TrivialName: PA14_66200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66200
PAO1 Ortholog Locus:PA5007
Sequence Length:759
Protein Length:252
Start: 5898531
Stop: 5897773
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08392.1|AE004913_7 (AE004913) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 252/252 (100%), Positives = 252/252 (100%)
Sequence:
ATGAGCGTTTTCATCGCCGCGCAGGACCACGACCTGCTCCAGCGCAACCGTCTGGACAGCTTCGACGCCCTG
TGGGCCTTGCAGCTGGACGCTGTGGACGAACCGAATACCGAACGGGGTGGCTGGAGCAGCGTCTACCGCCTC
GACCTGGGCGACTCCGCCTACTACCTGAAGCGCCAGAGCAACCACCTGACCCGCAGCCTGCGCCATCCGCTG
GGCGAGCCGACCTTCGCCCGCGAGTTCCGCAACATCGAGCGCTACCGGGCGCTGGGCATTCCCGCCCTGCAG
GCGGCGTTCTTCGCCCAGCAGGCGGTCGGCGGAGAGCGCCAGGCGATCCTCCTGACCCGTGCCCTGGACGGT
TGGCAGGACCTGGACACCTGGCTGGCGTCCTGGCACGACCTGGCCGAAGAGCGGCGCCGGGCGATTCTCCGG
GCGGTTGGCAGGCTGGCGCGCCAGCTGCACGCGGCCGGACAGATGCATGGTTGCTTCTATCCCAAGCATGTA
TTCCTCCGCGAGGGGGCCGATGGTGTCTTCGAGGCCTGCCTGATCGACCTGGAGAAGACCCGCCCGATCTGG
TTCGGCCGCCGCGACCAGGTCAAGGACCTGGAGCCGATGCTGCGCCGTGCCCCGGACTGGAGCGAAGCGGAC
GTGCACGAATTCATCTCTGCCTATGTCGACGAACCCCTCGACTCGGCCGAGGTCGAGCAGTGGTATCGCCTT
CTCGACCAGCGCCGTCGGCGCAAGGAGTCGCGCCGATGA
Translation:
MSVFIAAQDHDLLQRNRLDSFDALWALQLDAVDEPNTERGGWSSVYRLDLGDSAYYLKRQSNHLTRSLRHPL
GEPTFAREFRNIERYRALGIPALQAAFFAQQAVGGERQAILLTRALDGWQDLDTWLASWHDLAEERRRAILR
AVGRLARQLHAAGQMHGCFYPKHVFLREGADGVFEACLIDLEKTRPIWFGRRDQVKDLEPMLRRAPDWSEAD
VHEFISAYVDEPLDSAEVEQWYRLLDQRRRRKESRR*
AnnotationID:3064GeneID:3056
AnnotatorUID: diggins
Modification Date/Time: 2005-07-04 19:07:49
Gene Name:
Confidence Code:3
GeneProduct:putative heptose kinase WapQ
Cell Localization:()
Synonyms:wapQ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:putative lipopolysaccharide biosynthesis protein
Functional Category Confidence Code:5
COGs:pfam06293
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65977.1|AE016226_6 (AE016775) heptose kinase WapQ, putative [Pseudomonas putida
           KT2440]
          Length = 250

 Score =  312 bits (800), Expect = 1e-84
 Identities = 152/251 (60%), Positives = 193/251 (76%), Gaps = 1/251 (0%)

>gb|AAO58426.1| (AE016874) lipopolysaccharide biosynthesis protein, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 253

 Score =  301 bits (772), Expect = 2e-81
 Identities = 148/248 (59%), Positives = 184/248 (74%), Gaps = 1/248 (0%)







 
Structural Features:
pfam06293, Kdo, Lipopolysaccharide kinase (Kdo/WaaP) family. 
CD-Length = 206 residues, 100.0% aligned
Score =  216 bits (551), Expect = 2e-57
Identities = 88/207 (42%), Positives = 106/207 (51%), Gaps = 5/207 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6115




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23257




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35051




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3056_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3056
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4934
                           PA5007_tr
                           translation of PA5007
                           252
                           99.99
                           99.99
                           0
                           1332.0
     

     
     
139433
                           gb|AAG08392.1|AE004913_7
                           (AE004913) hypothetical protein PA5007 [Pseudomonas aeruginosa PAO1]
                           252
                           99.99
                           99.99
                           0
                           1332.0
     

     
     
139434
                           gb|AAC33173.1|
                           (U63816) unknown [Pseudomonas aeruginosa]
                           252
                           89.68
                           89.68
                           26
                           1197.0
     

     
     
139435
                           gb|AAD16156.1|
                           (AF097216) putative heptose kinase WapQ [Pseudomonas aeruginosa]
                           272
                           70.95
                           73.16
                           42
                           897.0
     

     
     
139436
                           gb|AAN65977.1|AE016226_6
                           (AE016775) heptose kinase WapQ, putative [Pseudomonas putida KT2440]
                           252
                           60.31
                           76.58
                           2
                           802.0
     

     






      

          
GC ORFID: 46058How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5007Glimmer Score: 

          
Start: 5162214Stop: 5161456

          
Length: 759


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5007 translation of PA5007Homolog Bit Score 517.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3383 (ORF: BLASTX 306.0), t_PA5007 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGTTTTCATCGCCGCGCAGGACCACGACCTGCTCCAGCGCAACCGTCTGGACAGCTTCGACGCCCTG 
TGGGCCTTGCAGCTGGACGCTGTGGACGAACCGAATACCGAACGGGGTGGCTGGAGCAGCGTCTACCGCCTC 
GACCTGGGCGACTCCGCCTACTACCTGAAGCGCCAGAGCAACCACCTGACCCGCAGCCTGCGCCATCCGCTG 
GGCGAGCCGACCTTCGCCCGCGAGTTCCGCAACATCGAGCGCTACCGGGCGCTGGGCATTCCCGCCCTGCAG 
GCGGCGTTCTTCGCCCAGCAGGCGGTCGGCGGAGAGCGCCAGGCGATCCTCCTGACCCGTGCCCTGGACGGT 
TGGCAGGACCTGGACACCTGGCTGGCGTCCTGGCACGACCTGGCCGAAGAGCGGCGCCGGGCGATTCTCCGG 
GCGGTTGGCAGGCTGGCGCGCCAGCTGCACGCGGCCGGACAGATGCATGGTTGCTTCTATCCCAAGCATGTA 
TTCCTCCGCGAGGGGGCCGATGGTGTCTTCGAGGCCTGCCTGATCGACCTGGAGAAGACCCGCCCGATCTGG 
TTCGGCCGCCGCGACCAGGTCAAGGACCTGGAGCCGATGCTGCGCCGTGCCCCGGACTGGAGCGAAGCGGAC 
GTGCACGAATTCATCTCTGCCTATGTCGACGAACCCCTCGACTCGGCCGAGGTCGAGCAGTGGTATCGCCTT 
CTCGACCAGCGCCGTCGGCGCAAGGAGTCGCGCCGATGA