ViewGene
Locus Name:
GeneID:
Location:

GeneID:3055
TrivialName: PA14_19570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19570
PAO1 Ortholog Locus:PA3443
Sequence Length:789
Protein Length:262
Start: 1691467
Stop: 1692255
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06831.1|AE004765_4 (AE004765) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 261/262 (99%), Positives = 261/262 (99%)
Sequence:
ATGAGCATTTCCAAACGACTGGCCGAGCGCCTGGCGCCCTGGGCGCTGCCGCTGGTCCTGCTGGCGGTGTGG
CAGGCGGCGGTGGAGTTCGGCTGGCTGTCCAGCCGCATCCTCCCCGCGCCCAGCGCCGTGCTCGAGGCCGGC
TGGGCGCTGCTGCGCAGCGGCGAGATCTGGCAGCACCTGGCGATCAGCGGCTGGCGCGCGGCGATCGGCTTT
CTCATCGGCGGCACCATCGGCCTGGTGCTGGGCTTCGTCACCGGCCTGTCGAAGTGGGGCGAACGCTTCCTC
GACAGTTCGGTGCAGATGATCCGCAACGTGCCGCACCTGGCGCTGATCCCGCTGGTGATCCTGTGGTTCGGC
ATCGACGAGTCGGCGAAGATCTTCCTGGTCGCCCTCGGCACGCTGTTCCCGATCTACCTGAACACCTACCAC
GGCATCCGCGGCATCGACCCCGGCCTGCTGGAGATGGCGCGCAGCTACGGGTTGTCCGGCTTCGCCCTGTTC
CGCCAGGTGATCCTGCCCGGCGCGCTGCCGTCGATCCTGGTCGGGGTGCGCTTCGCCCTCGGCTTCATGTGG
TTGACCCTGATCGTCGCCGAGACCATTTCCGCCAGCTCTGGCATCGGTTACCTGGCGATGAACGCCCGCGAG
TTCCTGCAGACCGACGTGGTGGTCCTGGCGATCCTGCTCTATGCCGTCCTCGGCAAGCTCGCCGACCTCGCC
GCCCGCGGTCTGGAACGCGTCTGGCTACGCTGGCACCCGGCCTACCAGGTCAAGGGAGGTGGCGCATGA
Translation:
MSISKRLAERLAPWALPLVLLAVWQAAVEFGWLSSRILPAPSAVLEAGWALLRSGEIWQHLAISGWRAAIGF
LIGGTIGLVLGFVTGLSKWGERFLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALGTLFPIYLNTYH
GIRGIDPGLLEMARSYGLSGFALFRQVILPGALPSILVGVRFALGFMWLTLIVAETISASSGIGYLAMNARE
FLQTDVVVLAILLYAVLGKLADLAARGLERVWLRWHPAYQVKGGGA*
AnnotationID:3063GeneID:3055
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 18:06:51
Gene Name:
Confidence Code:3
GeneProduct:putative aliphatic sulfonates transport permease protein
Cell Localization:()
Synonyms:ssuC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0600
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58741.1| (AE016875) aliphatic sulfonates ABC transporter, permease protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 265

 Score =  451 bits (1159), Expect = e-126
 Identities = 223/262 (85%), Positives = 241/262 (91%)

>emb|CAB40392.1| (AJ237695) putative aliphatic sulfonate transport membrane
           component [Escherichia coli]
          Length = 263

 Score =  398 bits (1022), Expect = e-110
 Identities = 192/254 (75%), Positives = 224/254 (88%)

>gb|AAM38041.1| (AE011965) ABC transporter permease [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 264

 Score =  385 bits (989), Expect = e-106
 Identities = 190/253 (75%), Positives = 211/253 (83%)






 
Structural Features:
COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component 
[Inorganic ion transport and metabolism]
CD-Length = 258 residues,  99.2% aligned
Score =  229 bits (586), Expect = 2e-61
Identities = 128/256 (50%), Positives = 165/256 (64%)








   
Genomic Context:






   
Comment:
another possible gene name: ycbM


















    ReferenceID:6113




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23255




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32125




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3055_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3055
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4932
                           PA3443_tr
                           translation of PA3443
                           262
                           99.61
                           99.61
                           0
                           1331.0
     

     
     
139388
                           gb|AAG06831.1|AE004765_4
                           (AE004765) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           262
                           99.61
                           99.61
                           0
                           1331.0
     

     
     
139389
                           gb|AAC31906.1|
                           (AF075709) ABC transporter membrane subunit [Pseudomonas putida]
                           265
                           85.28
                           90.94
                           3
                           1160.0
     

     
     
139392
                           dbj|BAC00974.1|
                           (AB086390) ABC-type transporter membrane permease component [Pseudomonas putida]
                           266
                           84.21
                           90.22
                           5
                           1155.0
     

     
     
139390
                           gb|AAO58741.1|
                           (AE016875) aliphatic sulfonates ABC transporter, permease protein [Pseudomonas syringae pv. tomato str. DC3000]
                           265
                           84.15
                           90.94
                           3
                           1159.0
     

     






      

          
GC ORFID: 46057How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3443Glimmer Score: 

          
Start: 3262465Stop: 3261677

          
Length: 789


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3443 translation of PA3443Homolog Bit Score 517.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6501 (ORF: BLASTX 449.0), psyr_15may02_Scaffold8_revised_gene7772 (ORF: BLASTX 239.0), t_PA3448 (ORF: BLASTX 230.0), t_PA3443 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATTTCCAAACGACTGGCCGAGCGCCTGGCGCCCTGGGCGCTGCCGCTGGTCCTGCTGGCGGTGTGG 
CAGGCGGCGGTGGAGTTCGGCTGGCTGTCCAGCCGCATCCTCCCCGCGCCCAGCGCCGTGCTCGAGGCCGGC 
TGGGCGCTGCTGCGCAGCGGCGAGATCTGGCAGCACCTGGCGATCAGCGGCTGGCGCGCGGCGATCGGCTTT 
CTCATCGGCGGCACCATCGGCCTGGTGCTGGGCTTCGTCACCGGCCTGTCGAAGTGGGGCGAACGCTTCCTC 
GACAGTTCGGTGCAGATGATCCGCAACGTGCCGCACCTGGCGCTGATCCCGCTGGTGATCCTGTGGTTCGGC 
ATCGACGAGTCGGCGAAGATCTTCCTGGTCGCCCTCGGCACGCTGTTCCCGATCTACCTGAACACCTACCAC 
GGCATCCGCGGCATCGACCCCGGCCTGCTGGAGATGGCGCGCAGCTACGGGTTGTCCGGCTTCGCCCTGTTC 
CGCCAGGTGATCCTGCCCGGCGCGCTGCCGTCGATCCTGGTCGGGGTGCGCTTCGCCCTCGGCTTCATGTGG 
TTGACCCTGATCGTCGCCGAGACCATTTCCGCCAGCTCTGGCATCGGTTACCTGGCGATGAACGCCCGCGAG 
TTCCTGCAGACCGACGTGGTGGTCCTGGCGATCCTGCTCTATGCCGTCCTCGGCAAGCTCGCCGACCTCGCC 
GCCCGCGGTCTGGAACGCGTCTGGCTACGCTGGCACCCGGCCTACCAGGTCAAGGGAGGTGGCGCATGA