ViewGene

Locus Name:
GeneID:
Location:

GeneID:3053
TrivialName: PA14_05420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05420
PAO1 Ortholog Locus:PA0416
Sequence Length:795
Protein Length:264
Start: 477829
Stop: 478623
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03805.1|AE004478_10 (AE004478) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 263/264 (99%), Positives = 264/264 (100%)
Sequence:
ATGGCCGGCCTGCAACACGCGCGGATCGGCGCCTCCCTCGAGGTCGCCAGCGCCAGCCTGGCCGGGCACCGC
TTCGAGAAGCACAGCCACGACGAGTTCGTCATCAGCGCCAACCTCTGCGGATTGGAAGATGTCTGGCTGGAT
GGCCGTACCTTCCAGGCCGACAGCGGCGACCTGACCCTCTACAACCCGGGGCAGATCCAGGGCGGCGGCGTC
CGCGACGGCCAGCCCTGGCGCTTCGCCAGCCTCTATCTGCCTGCCGCCGAACTGGCGAGCAGCCTGGATCTT
TCCTCCGTCGAGTTCGACCGCCCGCTGCTGCGCAATCCGGCGCTGGGCCGCGAGTTGGCCGCCAGCATCGAA
GCCTTGCTGGCCAGCGACCGCTTCGCCCGCGAACGGGGCGAGGAGCGCCTGCTGGAGTTCCTCGGCCGCCTG
CTGGCGGCGAGCGGCACCCGCCTGCCGCAGAGGGCCGATCCTGGGCGCCCGGCTGTCGCCCGCCTGCAGGCG
CTGCTCGCCGAGCGCCTGGCCGAGCCGCCGGACCTGGATGGGATGGCGGAGCAGGTGGGCCTGTCGAAATAC
CACCTGCTGCGGGCGTTCAAGAAGGCCACCGGGCTCAGCCCGCGACAGTGGAGCATGCAATTGCGCACCCGC
CGCGCCCTCGGCCTGTTACGCCGTGGCCTGGCGGTGGGCGAGGTGGCCCACGCCCTGGGCTTCGCCGACCAG
AGCCACCTGACCCGTTACTTCACCAGCGCCTACGGCATTTCGCCGGGCCGCTACCAGCGCGCTGTGCGCGGC
TGA
Translation:
MAGLQHARIGASLEVASASLAGHRFEKHSHDEFVISANLCGLEDVWLDGRTFQADSGDLTLYNPGQIQGGGV
RDGQPWRFASLYLPAAELASSLDLSSVEFDRPLLRNPALGRELAASIEALLASDRFARERGEERLLEFLGRL
LAASGTRLPQRADPGRPAVARLQALLAERLAEPPDLDGMAEQVGLSKYHLLRAFKKATGLSPRQWSMQLRTR
RALGLLRRGLAVGEVAHALGFADQSHLTRYFTSAYGISPGRYQRAVRG*
AnnotationID:3061GeneID:3053
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 08:08:08
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:chpD
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342,pfam02311
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues, 100.0% aligned
Score = 84.9 bits (210), Expect = 9e-18
Identities = 34/84 (40%), Positives = 52/84 (61%), Gaps = 1/84 (1%)

pfam02311, AraC_binding, AraC-like ligand binding domain.
CD-Length = 140 residues,  97.1% aligned
Score = 81.3 bits (200), Expect = 1e-16
Identities = 42/136 (30%), Positives = 54/136 (39%), Gaps = 2/136 (1%)
Genomic Context:
Comment:
ReferenceID:6109
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23251
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33723
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3053_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3053

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4928 PA0416_tr translation of PA0416 264 99.62 99.99 0 1334.0
139347 gb|AAG03805.1|AE004478_10 (AE004478) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 264 99.62 99.99 0 1334.0
139348 gb|AAC23934.1| (U79580) ChpD [Pseudomonas aeruginosa] 264 99.62 99.99 0 1334.0
GC ORFID: 46055How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0416Glimmer Score:
Start: 6279171Stop: 6279965
Length: 795
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0416 translation of PA0416Homolog Bit Score 518.0
Other Homologs: t_PA0416 (ORF: GLIMMER)
GC ORF Sequence
ATGGCCGGCCTGCAACACGCGCGGATCGGCGCCTCCCTCGAGGTCGCCAGCGCCAGCCTGGCCGGGCACCGC
TTCGAGAAGCACAGCCACGACGAGTTCGTCATCAGCGCCAACCTCTGCGGATTGGAAGATGTCTGGCTGGAT
GGCCGTACCTTCCAGGCCGACAGCGGCGACCTGACCCTCTACAACCCGGGGCAGATCCAGGGCGGCGGCGTC
CGCGACGGCCAGCCCTGGCGCTTCGCCAGCCTCTATCTGCCTGCCGCCGAACTGGCGAGCAGCCTGGATCTT
TCCTCCGTCGAGTTCGACCGCCCGCTGCTGCGCAATCCGGCGCTGGGCCGCGAGTTGGCCGCCAGCATCGAA
GCCTTGCTGGCCAGCGACCGCTTCGCCCGCGAACGGGGCGAGGAGCGCCTGCTGGAGTTCCTCGGCCGCCTG
CTGGCGGCGAGCGGCACCCGCCTGCCGCAGAGGGCCGATCCTGGGCGCCCGGCTGTCGCCCGCCTGCAGGCG
CTGCTCGCCGAGCGCCTGGCCGAGCCGCCGGACCTGGATGGGATGGCGGAGCAGGTGGGCCTGTCGAAATAC
CACCTGCTGCGGGCGTTCAAGAAGGCCACCGGGCTCAGCCCGCGACAGTGGAGCATGCAATTGCGCACCCGC
CGCGCCCTCGGCCTGTTACGCCGTGGCCTGGCGGTGGGCGAGGTGGCCCACGCCCTGGGCTTCGCCGACCAG
AGCCACCTGACCCGTTACTTCACCAGCGCCTACGGCATTTCGCCGGGCCGCTACCAGCGCGCTGTGCGCGGC
TGA