ViewGene
Locus Name:
GeneID:
Location:

GeneID:3052
TrivialName: PA14_04440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04440
PAO1 Ortholog Locus:PA0340
Sequence Length:804
Protein Length:267
Start: 397086
Stop: 397889
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03729.1|AE004472_1 (AE004472) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 266/267 (99%), Positives = 266/267 (99%)
Sequence:
ATGGAGTTTCTCCTCTATATCGTGCTGGGCGCCTGTGCCGGCGTGCTGGCCGGACTGTTCGGCGTCGGTGGC
GGCCTGATCATCGTCCCGGCGCTGGTCTTCAGCTTCACCGCGCACGGTTTCGGCGGCGACGTCCTGACCCAG
ATGGCGGTCGGCACCTCCCTGGCGACCATCGTCTTCACTTCGATCAATTCCATTCTCGAACACCATCGGCGC
GGCGCGGTGCGCTGGCCGGTGTTCGCCTGGATGACCCTCGGCATCCTCATCGGCAGTGCCCTCGGCGCGCTG
ACCGCGGCGCAGATCAAGGGGCTGCTGTTGCAGAAGATAATCGGGGTGTTCGCCATCCTGGTCGCTTTGCAG
ATGGTTCTCGATCTCAAGCCAAAGGGTAGCCGCGAGGTGCCCGGCAAGGGCGGCCTGACCCTGGCCGGCGCG
GTGATCGGCTGGGCCTCGGCGATCTTCGGCATCGGCGGCGGTTCGCTGACCGTGCCTTTCCTCAGTTGGCGC
AGCGTGCCGATGCAGCAGGCGGTGGCGACTTCCTCGGCCTGCGGCCTACCTATCGCCATTTCCGGCGCCCTG
TCGTTCATCGCGGTCGGCTGGCACAACCCGCAGTTGCCGGAGTGGAGCCTGGGCTACGTCTATCTGCCGGCG
TTGGTCGGCATCGCCGCCACCAGTATGCTGTTCGCCCGCTTCGGCGCGCGCCTGGCGCATCGTTTGTCGCCG
CGCGTACTCAAGCGACTGTTCGCCCTGCTGCTGTTCAGCGTGGGCATAAGTTTCCTGACCCCCGATCTCGCT
TTTCTGTCGTAG
Translation:
MEFLLYIVLGACAGVLAGLFGVGGGLIIVPALVFSFTAHGFGGDVLTQMAVGTSLATIVFTSINSILEHHRR
GAVRWPVFAWMTLGILIGSALGALTAAQIKGLLLQKIIGVFAILVALQMVLDLKPKGSREVPGKGGLTLAGA
VIGWASAIFGIGGGSLTVPFLSWRSVPMQQAVATSSACGLPIAISGALSFIAVGWHNPQLPEWSLGYVYLPA
LVGIAATSMLFARFGARLAHRLSPRVLKRLFALLLFSVGISFLTPDLAFLS*
AnnotationID:3060GeneID:3052
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 17:05:17
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:()
Synonyms:PA0340
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0730
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0730, Predicted permeases
CD-Length = 258 residues,  98.4% aligned
Score = 73.5 bits (180), Expect = 3e-14
Identities = 102/273 (37%), Positives = 147/273 (53%), Gaps = 26/273 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6107




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23249




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33658




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3052_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3052
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4927
                           PA0340_tr
                           translation of PA0340
                           267
                           99.62
                           99.62
                           0
                           1335.0
     

     
     
139331
                           gb|AAG03729.1|AE004472_1
                           (AE004472) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           267
                           99.62
                           99.62
                           0
                           1335.0
     

     
     
139332
                           gb|AAN70708.1|AE016714_6
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           267
                           74.15
                           84.64
                           7
                           1030.0
     

     
     
139333
                           gb|AAQ58180.1|
                           (AE016911) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           273
                           45.05
                           62.27
                           10
                           579.0
     

     
     
139337
                           gb|AAO09036.1|AE016798_196
                           (AE016798) Predicted permease [Vibrio vulnificus CMCP6]
                           270
                           43.33
                           58.88
                           10
                           512.0
     

     






      

          
GC ORFID: 46054How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0340Glimmer Score: 

          
Start: 6198428Stop: 6199231

          
Length: 804


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0340 translation of PA0340Homolog Bit Score 518.0

          
Other Homologs:  t_PA0340 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGTTTCTCCTCTATATCGTGCTGGGCGCCTGTGCCGGCGTGCTGGCCGGACTGTTCGGCGTCGGTGGC 
GGCCTGATCATCGTCCCGGCGCTGGTCTTCAGCTTCACCGCGCACGGTTTCGGCGGCGACGTCCTGACCCAG 
ATGGCGGTCGGCACCTCCCTGGCGACCATCGTCTTCACTTCGATCAATTCCATTCTCGAACACCATCGGCGC 
GGCGCGGTGCGCTGGCCGGTGTTCGCCTGGATGACCCTCGGCATCCTCATCGGCAGTGCCCTCGGCGCGCTG 
ACCGCGGCGCAGATCAAGGGGCTGCTGTTGCAGAAGATAATCGGGGTGTTCGCCATCCTGGTCGCTTTGCAG 
ATGGTTCTCGATCTCAAGCCAAAGGGTAGCCGCGAGGTGCCCGGCAAGGGCGGCCTGACCCTGGCCGGCGCG 
GTGATCGGCTGGGCCTCGGCGATCTTCGGCATCGGCGGCGGTTCGCTGACCGTGCCTTTCCTCAGTTGGCGC 
AGCGTGCCGATGCAGCAGGCGGTGGCGACTTCCTCGGCCTGCGGCCTACCTATCGCCATTTCCGGCGCCCTG 
TCGTTCATCGCGGTCGGCTGGCACAACCCGCAGTTGCCGGAGTGGAGCCTGGGCTACGTCTATCTGCCGGCG 
TTGGTCGGCATCGCCGCCACCAGTATGCTGTTCGCCCGCTTCGGCGCGCGCCTGGCGCATCGTTTGTCGCCG 
CGCGTACTCAAGCGACTGTTCGCCCTGCTGCTGTTCAGCGTGGGCATAAGTTTCCTGACCCCCGATCTCGCT 
TTTCTGTCGTAG