ViewGene

Locus Name:
GeneID:
Location:

GeneID:3051
TrivialName: PA14_09980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09980
PAO1 Ortholog Locus:PA4167
Sequence Length:819
Protein Length:272
Start: 859186
Stop: 860004
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07554.1|AE004833_5 (AE004833) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 269/272 (98%), Positives = 269/272 (98%)
Sequence:
ATGTCTTCCACCATCCACCCCCTCCCGTCCTTCGGTCTCGGCACCTTCCGCCTCACCGGCCAGGTCGTCGTC
GACTCGGTGCGCAGCGCCCTCGAGCTGGGTTATCGCGCCATCGATACCGCGCAGATCTACGGCAACGAGGCG
GATATCGGCCGCGCGATCGCCGAGAGCGGCGTACCGCGTTCCGAGCTGTTCCTCACCACCAAGGTCTGGGTC
GACAACTACGCCTGCGAAAAGCTGCTCGCCAGCCTGCGCGAGAGTCTGGAGAAACTGCGCACCGACCGGTTG
GACCTGGTCCTGATCCATTGGCCGGCACCCGGCAACGGCGTCGAGCTGGCGGAGTACATGGCGGCGCTGGCG
GAAGCCAAGTCCCTGGGCCTGACCCGGCGGATCGGCGTCTCCAACTTCAACATCGAACTGACCCGCCAGGCC
ATCGCCGCGGTCGGTGCGGGCGAGATATCCACCAACCAGATCGAACTCAGCCCTTACTTGCAGAACCGCGCG
CTGACCGCCTACCTCGAGGAGCAGGGCATCGCGGTCACCTCGTACATGACCCTGGCCTACGGCAAGGTGCTG
AAGGACCCGGCGCTGGCCGGGATAGCCGCCAGGCACCGGGCCACGGTCGCCCAGGTGGCGCTGGCCTGGGCG
ATGCAACTGGGCTACGCGGTGATTCCGTCCTCGACCCGCCGCGAGAACCTCGCCAGCAACCTGCTGGCGCGC
GACCTGCGCCTGGACGCCGAGGACATGGCGCGCATCGCCGGCCTCGAGCGTAACGGCCGCGAGGTCAGTCCG
CAGGGCCTGGCGCCGGCCTGGGACTGA
Translation:
MSSTIHPLPSFGLGTFRLTGQVVVDSVRSALELGYRAIDTAQIYGNEADIGRAIAESGVPRSELFLTTKVWV
DNYACEKLLASLRESLEKLRTDRLDLVLIHWPAPGNGVELAEYMAALAEAKSLGLTRRIGVSNFNIELTRQA
IAAVGAGEISTNQIELSPYLQNRALTAYLEEQGIAVTSYMTLAYGKVLKDPALAGIAARHRATVAQVALAWA
MQLGYAVIPSSTRRENLASNLLARDLRLDAEDMARIAGLERNGREVSPQGLAPAWD*
AnnotationID:3059GeneID:3051
AnnotatorUID: diggins
Modification Date/Time: 2005-06-06 20:08:14
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase, aldo/keto reductase family
Cell Localization:(1) Cytoplasmic
Synonyms:yafB
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0656,pfam00248
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67981.1|AE016430_5 (AE016782) oxidoreductase, aldo/keto reductase family [Pseudomonas
           putida KT2440]
          Length = 267

 Score =  431 bits (1108), Expect = e-120
 Identities = 215/265 (81%), Positives = 240/265 (90%)

>emb|CAE33434.1| (BX640445) probable aldehyde reductase [Bordetella bronchiseptica]
          Length = 267

 Score =  429 bits (1103), Expect = e-120
 Identities = 215/265 (81%), Positives = 239/265 (90%)

>gb|AAL19212.1| (AE008706) 2,5-diketo-D-gluconate reductase B [Salmonella
           typhimurium LT2]
          Length = 267

 Score =  355 bits (912), Expect = 1e-97
 Identities = 178/265 (67%), Positives = 216/265 (81%)

Structural Features:
COG0656, ARA1, Aldo/keto reductases, related to diketogulonate reductase.
CD-Length = 280 residues,  97.1% aligned
Score =  303 bits (777), Expect = 2e-83
Identities = 122/274 (44%), Positives = 160/274 (58%), Gaps = 4/274 (1%)

pfam00248, Aldo_ket_red, Aldo/keto reductase family.
CD-Length = 279 residues,  97.8% aligned
Score =  228 bits (583), Expect = 5e-61
Identities = 108/273 (39%), Positives = 156/273 (57%), Gaps = 23/273 (8%)
Genomic Context:
Comment:
ReferenceID:6105
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23247
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36903
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3051_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3051

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4926 PA4167_tr translation of PA4167 272 98.89 98.89 0 1335.0
139282 gb|AAG07554.1|AE004833_5 (AE004833) probable oxidoreductase [Pseudomonas aeruginosa PAO1] 272 98.89 98.89 0 1335.0
139283 gb|AAN67981.1|AE016430_5 (AE016782) oxidoreductase, aldo/keto reductase family [Pseudomonas putida KT2440] 272 79.04 88.23 5 1105.0
139284 emb|CAE33434.1| (BX640445) probable aldehyde reductase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 272 79.04 87.86 5 1100.0
139285 emb|CAE38266.1| (BX640432) probable aldehyde reductase [Bordetella parapertussis] 272 79.04 87.86 5 1100.0
GC ORFID: 46053How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4167Glimmer Score:
Start: 4094751Stop: 4093933
Length: 819
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4167 translation of PA4167Homolog Bit Score 518.0
Other Homologs: t_PA4167 (ORF: GLIMMER)
GC ORF Sequence
ATGTCTTCCACCATCCACCCCCTCCCGTCCTTCGGTCTCGGCACCTTCCGCCTCACCGGCCAGGTCGTCGTC
GACTCGGTGCGCAGCGCCCTCGAGCTGGGTTATCGCGCCATCGATACCGCGCAGATCTACGGCAACGAGGCG
GATATCGGCCGCGCGATCGCCGAGAGCGGCGTACCGCGTTCCGAGCTGTTCCTCACCACCAAGGTCTGGGTC
GACAACTACGCCTGCGAAAAGCTGCTCGCCAGCCTGCGCGAGAGTCTGGAGAAACTGCGCACCGACCGGTTG
GACCTGGTCCTGATCCATTGGCCGGCACCCGGCAACGGCGTCGAGCTGGCGGAGTACATGGCGGCGCTGGCG
GAAGCCAAGTCCCTGGGCCTGACCCGGCGGATCGGCGTCTCCAACTTCAACATCGAACTGACCCGCCAGGCC
ATCGCCGCGGTCGGTGCGGGCGAGATATCCACCAACCAGATCGAACTCAGCCCTTACTTGCAGAACCGCGCG
CTGACCGCCTACCTCGAGGAGCAGGGCATCGCGGTCACCTCGTACATGACCCTGGCCTACGGCAAGGTGCTG
AAGGACCCGGCGCTGGCCGGGATAGCCGCCAGGCACCGGGCCACGGTCGCCCAGGTGGCGCTGGCCTGGGCG
ATGCAACTGGGCTACGCGGTGATTCCGTCCTCGACCCGCCGCGAGAACCTCGCCAGCAACCTGCTGGCGCGC
GACCTGCGCCTGGACGCCGAGGACATGGCGCGCATCGCCGGCCTCGAGCGTAACGGCCGCGAGGTCAGTCCG
CAGGGCCTGGCGCCGGCCTGGGACTGA