ViewGene

Locus Name:
GeneID:
Location:

GeneID:3050
TrivialName: PA14_10570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10570
PAO1 Ortholog Locus:PA4128
Sequence Length:807
Protein Length:268
Start: 911694
Stop: 910888
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07515.1|AE004829_5 (AE004829) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 263/268 (98%), Positives = 264/268 (98%)
Sequence:
ATGGACCTGCCCGTCAATCGCTTCAAGCAACGCCTGCGCAGCGGCGAGGCGCAGATCGGCCTGTGGCTCGGC
CTGGCCGATCCCTACTGCGCGGAGCTGGCCGCCAACGCCGGCTTCGACTGGCTGCTGCTGGACGGCGAGCAC
GCGCCCAACGACCTGCGCAGCCTGCTCGGCCAGTTGCAGGCGCTGGCGCCCTACCCCGGCCAGCCGGTGATT
CGCCCGGTGCAGGGCGACACCGCGCTGATCAAGCAATTGCTCGACATCGGCGCACAGACCCTGCTGGTACCG
ATGGTCGACAGCGCCGCCCAGGCCGAAGGCCTGGTGCGCGCCGTGCGCTATCCGCCGGCGGGCGTGCGCGGG
GTCGGCAGTGCGCTGGCCCGGGCTTCGCGCTGGAACAGCGTGGCGGAATACCTGGACCACGCCGACGAGCAG
ATGTGCCTGCTGGTCCAGGTGGAAAACCTGGAGGGCCTGGCCAACCTCGACGCGATCGCCGCTGTCGAGGGT
GTCGACGGCGTGTTCATCGGTCCGGCCGACCTCAGCGCAGCCATGGGCCATCGCGGCAATCCCGGCCATCCC
GAGGTGCAGGCGGCCATCGAGGACGCCATCCGCCGCATCCGCGCGGCCGGCAAGGCCGCCGGCATCCTCTCC
GCCGACGAGGCGCTGGCGCGGCGCTACCTGGAGCTGGGCTGCGCGTTCGTCGCGGTGGGCGTGGACACCAGC
CTGCTGATGCGTTCGCTGCGCGAGCTGGCGGGGCGCTTCAAGGGCGGCGCGCCGGCGCCGTCCGTCAGTTCC
TCGGTCTACGGCTGA
Translation:
MDLPVNRFKQRLRSGEAQIGLWLGLADPYCAELAANAGFDWLLLDGEHAPNDLRSLLGQLQALAPYPGQPVI
RPVQGDTALIKQLLDIGAQTLLVPMVDSAAQAEGLVRAVRYPPAGVRGVGSALARASRWNSVAEYLDHADEQ
MCLLVQVENLEGLANLDAIAAVEGVDGVFIGPADLSAAMGHRGNPGHPEVQAAIEDAIRRIRAAGKAAGILS
ADEALARRYLELGCAFVAVGVDTSLLMRSLRELAGRFKGGAPAPSVSSSVYG*
AnnotationID:3058GeneID:3050
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 13:01:21
Gene Name:
Confidence Code:3
GeneProduct:putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
Cell Localization:()
Synonyms:hpcH
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3836,pfam03328
Secondary Functional Category(ies):
EC Number:4.1.2.-
Status:ACTIVE
Pathway:
Homology:
>emb|CAE31240.1| (BX640439) 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
           [Bordetella bronchiseptica]
          Length = 269

 Score =  366 bits (939), Expect = e-101
 Identities = 180/267 (67%), Positives = 211/267 (79%)

>gb|AAF12475.1|AE001863_100 (AE001863) 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase
           [Deinococcus radiodurans]
          Length = 277

 Score =  358 bits (920), Expect = 1e-98
 Identities = 180/249 (72%), Positives = 202/249 (81%)

>gb|AAK03619.1| (AE006190) HpaI [Pasteurella multocida]
          Length = 266

 Score =  355 bits (911), Expect = 2e-97
 Identities = 181/260 (69%), Positives = 205/260 (78%)

Structural Features:
COG3836, HpcH, 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase 
[Carbohydrate transport and metabolism]
CD-Length = 255 residues, 100.0% aligned
Score =  368 bits (947), Expect = 3e-103
Identities = 177/255 (69%), Positives = 199/255 (78%)

pfam03328, HpcH_HpaI, HpcH/HpaI aldolase family. 
CD-Length = 258 residues, 100.0% aligned
Score =  302 bits (776), Expect = 2e-83
Identities = 149/258 (57%), Positives = 183/258 (70%), Gaps = 5/258 (1%)
Genomic Context:
Comment:
other possible gene name: hpaI
ReferenceID:6103
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23245
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36886
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3050_cdd.html
URL:
ReferenceID:36964
Author/Investigator(s): Prieto MA, Diaz E, Garcia JL.
Title: Molecular characterization of the 4-hydroxyphenylacetate catabolic pathway of Escherichia coli W: engineering a mobile aromatic degradative cluster.
PubMed: 8550403
MedLine:
Source:
J Bacteriol. 1996 Jan;178(1):111-20.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8550403
ReferenceID:36965
Author/Investigator(s): Stringfellow JM, Turpin B, Cooper RA.
Title: Sequence of the Escherichia coli C homoprotocatechuic acid degradative operon completed with that of the 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase-encoding gene (hpcH).
PubMed: 8529896
MedLine:
Source:
Gene. 1995 Dec 1;166(1):73-6.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8529896
ReferenceID:36973
Author/Investigator(s): Jenkins JR, Cooper RA.
Title: Molecular cloning, expression, and analysis of the genes of the homoprotocatechuate catabolic pathway of Escherichia coli C.
PubMed: 3053656
MedLine:
Source:
J Bacteriol. 1988 Nov;170(11):5317-24.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3053656
Homologs By Global Alignment
Gene ID:3050

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4925 PA4128_tr translation of PA4128 268 98.13 98.50 0 1334.0
139231 gb|AAG07515.1|AE004829_5 (AE004829) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 268 98.13 98.50 0 1334.0
139234 gb|AAK03619.1| (AE006190) HpaI [Pasteurella multocida] 270 67.40 76.66 6 906.0
139232 emb|CAE31240.1| (BX640439) 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 270 66.66 78.14 3 939.0
139233 gb|AAF12475.1|AE001863_100 (AE001863) 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Deinococcus radiodurans] [Deinococcus radiodurans R1] 279 66.66 74.91 13 924.0
GC ORFID: 46052How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4128Glimmer Score:
Start: 4042243Stop: 4043049
Length: 807
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4128 translation of PA4128Homolog Bit Score 518.0
Other Homologs: t_PA4128 (ORF: GLIMMER)
GC ORF Sequence
ATGGACCTGCCCGTCAATCGCTTCAAGCAACGCCTGCGCAGCGGCGAGGCGCAGATCGGCCTGTGGCTCGGC
CTGGCCGATCCCTACTGCGCGGAGCTGGCCGCCAACGCCGGCTTCGACTGGCTGCTGCTGGACGGCGAGCAC
GCGCCCAACGACCTGCGCAGCCTGCTCGGCCAGTTGCAGGCGCTGGCGCCCTACCCCGGCCAGCCGGTGATT
CGCCCGGTGCAGGGCGACACCGCGCTGATCAAGCAATTGCTCGACATCGGCGCACAGACCCTGCTGGTACCG
ATGGTCGACAGCGCCGCCCAGGCCGAAGGCCTGGTGCGCGCCGTGCGCTATCCGCCGGCGGGCGTGCGCGGG
GTCGGCAGTGCGCTGGCCCGGGCTTCGCGCTGGAACAGCGTGGCGGAATACCTGGACCACGCCGACGAGCAG
ATGTGCCTGCTGGTCCAGGTGGAAAACCTGGAGGGCCTGGCCAACCTCGACGCGATCGCCGCTGTCGAGGGT
GTCGACGGCGTGTTCATCGGTCCGGCCGACCTCAGCGCAGCCATGGGCCATCGCGGCAATCCCGGCCATCCC
GAGGTGCAGGCGGCCATCGAGGACGCCATCCGCCGCATCCGCGCGGCCGGCAAGGCCGCCGGCATCCTCTCC
GCCGACGAGGCGCTGGCGCGGCGCTACCTGGAGCTGGGCTGCGCGTTCGTCGCGGTGGGCGTGGACACCAGC
CTGCTGATGCGTTCGCTGCGCGAGCTGGCGGGGCGCTTCAAGGGCGGCGCGCCGGCGCCGTCCGTCAGTTCC
TCGGTCTACGGCTGA