ViewGene
Locus Name:
GeneID:
Location:

GeneID:3048
TrivialName: PA14_18020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18020
PAO1 Ortholog Locus:PA3578
Sequence Length:786
Protein Length:261
Start: 1547683
Stop: 1548468
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06966.1|AE004778_10 (AE004778) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 258/260 (99%), Positives = 259/260 (99%)
Sequence:
ATGCAGCTCGAGTTCCACCAGGTCGACGCGTTTTCTTCCCGCCCGTTCAGCGGCAATCCCGCCGTGGTCTAT
CGCCTCGGCGCCTGGCTGGCGGACGAGCTGATGCAGATGATCGCGACCGAGCACAACCTCTCCGAGACCGCC
TTCGTCGTTCGTGAAGGAGAGGCCTGGCGGATCCGCTGGTTCACCCCGAGCGTCGAGGTGGCGCTCTGCGGC
CACGCCACACTGGCTGCGGCCCACGTACTGTTCGAGGTCTATGACGAGCCGGGCGAGCGCCTGGAATTCATC
TCGCGCTCCGGTGCGCTGCGGGTCAACCGCGAGGACGAGCGGCTGGTCCTGGATTTCCCCGCGCAGTATCCG
AGCGAGGTCGGTAGCACCGTCGAGCTGGAGCAGGCCCTGGGCCTGCCGCCGGTGGACGTGCTGGGCTCCACC
GACAAGCTGCTGGTACTGCTCGAGTCCGAAGAGGCGGTGCGCGCCTGTCGTCCCGACTTCGCGGCCCTGGCG
CGGCTGCCCTGGCGTGGAGTGATCGTCACCGCGCGGGGCATGCAGAAGGATTTCGTCTCGCGCTTCTTCGCT
CCGGCGATGGGCGTCGACGAAGACCCGGTCACCGGCTCCGCGCATTGCAGCCTGATTCCCTACTGGGCCCAG
CGCTTGAACAAACTGTCGCTGACCGCCCAGCAGTGCTCGGCGCGCGGCGGCGAGCTGTGGTGCCGGTTGGAG
GGCGAGCGGGTGAGTATCGCCGGGCATGCGGTGCTGGTGGCGAGCGGAAGGATTCGATTGGGCTGA
Translation:
MQLEFHQVDAFSSRPFSGNPAVVYRLGAWLADELMQMIATEHNLSETAFVVREGEAWRIRWFTPSVEVALCG
HATLAAAHVLFEVYDEPGERLEFISRSGALRVNREDERLVLDFPAQYPSEVGSTVELEQALGLPPVDVLGST
DKLLVLLESEEAVRACRPDFAALARLPWRGVIVTARGMQKDFVSRFFAPAMGVDEDPVTGSAHCSLIPYWAQ
RLNKLSLTAQQCSARGGELWCRLEGERVSIAGHAVLVASGRIRLG*
AnnotationID:3056GeneID:3048
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 09:09:54
Gene Name:
Confidence Code:3
GeneProduct:putative phenazine biosynthesis protein, PhzF family
Cell Localization:()
Synonyms:PA3578
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0384,KOG3033,pfam02567
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN51287.1|AE011563_3 (AE011563) phenazine biosynthesis protein, PhzF family [Leptospira
           interrogans serovar lai str. 56601]
          Length = 274

 Score =  229 bits (585), Expect = 9e-60
 Identities = 125/261 (47%), Positives = 169/261 (64%), Gaps = 2/261 (0%)

>gb|AAO79994.1| (AE016947) phenazine biosynthesis protein PhzF family [Enterococcus
           faecalis V583]
          Length = 262

 Score =  228 bits (582), Expect = 2e-59
 Identities = 128/261 (49%), Positives = 159/261 (60%), Gaps = 2/261 (0%)








 
Structural Features:
COG0384, Predicted epimerase, PhzC/PhzF homolog
CD-Length = 291 residues,  99.7% aligned
Score =  248 bits (635), Expect = 9e-67
Identities = 117/290 (40%), Positives = 149/290 (51%), Gaps = 30/290 (10%)

KOG3033, Predicted PhzC/PhzF-type epimerase
CD-Length = 286 residues,  97.9% aligned
Score =  212 bits (542), Expect = 6e-56
Identities = 112/280 (40%), Positives = 152/280 (54%), Gaps = 24/280 (8%)

pfam02567, PhzC-PhzF, Phenazine biosynthesis-like protein. 
CD-Length = 288 residues,  99.3% aligned
Score =  186 bits (474), Expect = 4e-48
Identities = 109/286 (38%), Positives = 140/286 (48%), Gaps = 33/286 (11%)







   
Genomic Context:






   
Comment:


















    ReferenceID:6099




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23241




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31964




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3048_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3048
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4919
                           PA3578_tr
                           translation of PA3578
                           261
                           98.85
                           99.23
                           0
                           1333.0
     

     
     
139151
                           gb|AAG06966.1|AE004778_10
                           (AE004778) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           261
                           98.85
                           99.23
                           0
                           1333.0
     

     
     
4920
                           PA2770_tr
                           translation of PA2770
                           262
                           54.96
                           66.79
                           4
                           676.0
     

     
     
139152
                           gb|AAG06158.1|AE004704_12
                           (AE004704) hypothetical protein PA2770 [Pseudomonas aeruginosa PAO1]
                           262
                           54.96
                           66.79
                           4
                           676.0
     

     
     
139153
                           gb|AAN69895.1|AE016628_8
                           (AE016790) phenazine biosynthesis protein, PhzF family [Pseudomonas putida KT2440]
                           263
                           50.95
                           65.77
                           3
                           640.0
     

     






      

          
GC ORFID: 46050How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3578Glimmer Score: 

          
Start: 3406253Stop: 3405468

          
Length: 786


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3578 translation of PA3578Homolog Bit Score 518.0

          
Other Homologs:  t_PA2770 (ORF: BLASTX 263.0), t_PA3578 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCTCGAGTTCCACCAGGTCGACGCGTTTTCTTCCCGCCCGTTCAGCGGCAATCCCGCCGTGGTCTAT 
CGCCTCGGCGCCTGGCTGGCGGACGAGCTGATGCAGATGATCGCGACCGAGCACAACCTCTCCGAGACCGCC 
TTCGTCGTTCGTGAAGGAGAGGCCTGGCGGATCCGCTGGTTCACCCCGAGCGTCGAGGTGGCGCTCTGCGGC 
CACGCCACACTGGCTGCGGCCCACGTACTGTTCGAGGTCTATGACGAGCCGGGCGAGCGCCTGGAATTCATC 
TCGCGCTCCGGTGCGCTGCGGGTCAACCGCGAGGACGAGCGGCTGGTCCTGGATTTCCCCGCGCAGTATCCG 
AGCGAGGTCGGTAGCACCGTCGAGCTGGAGCAGGCCCTGGGCCTGCCGCCGGTGGACGTGCTGGGCTCCACC 
GACAAGCTGCTGGTACTGCTCGAGTCCGAAGAGGCGGTGCGCGCCTGTCGTCCCGACTTCGCGGCCCTGGCG 
CGGCTGCCCTGGCGTGGAGTGATCGTCACCGCGCGGGGCATGCAGAAGGATTTCGTCTCGCGCTTCTTCGCT 
CCGGCGATGGGCGTCGACGAAGACCCGGTCACCGGCTCCGCGCATTGCAGCCTGATTCCCTACTGGGCCCAG 
CGCTTGAACAAACTGTCGCTGACCGCCCAGCAGTGCTCGGCGCGCGGCGGCGAGCTGTGGTGCCGGTTGGAG 
GGCGAGCGGGTGAGTATCGCCGGGCATGCGGTGCTGGTGGCGAGCGGAAGGATTCGATTGGGCTGA