ViewGene
Locus Name:
GeneID:
Location:

GeneID:3047
TrivialName: PA14_48810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48810
PAO1 Ortholog Locus:PA1197
Sequence Length:771
Protein Length:256
Start: 4339626
Stop: 4338856
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04586.1|AE004550_2 (AE004550) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 255/256 (99%), Positives = 255/256 (99%)
Sequence:
ATGGACAGCCACAGCCCGATCGCCACCGTCGCCCAGGCCCTGCGGCGCGCCGAACGCATCCTGGTCATCACC
GGCGCCGGCCTCTCCGCGGACTCCGGTATGCCCACCTATCGCGGCCTCGGCGGTCTCTACAACGGTCGCACG
GAAGAGGGCCTGCCGATCGAGGCGGCGCTTTCCGGACCGATGCTGCGGCGCGATCCGGCGCTGTGCTGGAAG
TACCTCGCGGAACTCGGCAAGGCTTGCCTGGCGGCCCGACCCAACGCCGGCCACGAAGCCATTGCCGAGTTG
CAGAAGCGCAAGCCGGAATGCTGGGTGCTGACCCAGAACATCGACGGCTTCCATCGCCAGGCCGGCTCGCCG
GCCGAGCGGCTGATCGAGATCCATGGCGAACTGGCGCCGCTCTACTGCCAGTCCTGCGGTGCCGAGAGCGGC
GGCCTGGAGGAACATCTGCACGGCCAGTTGCCGCCGCGCTGCGCGGCTTGCGGCGGGGTGCTGCGGCCACCG
GTAGTGCTGTTCGAGGAAATGTTGCCGGAAGAGGCGATCGATACCCTGTACCGCGAATTGCGCAAAGGCTTC
GATGCGGTGCTGGTGGTGGGAACCACCGCGAGCTTCCCCTATATCGTCGAACCGGTGCTGCGCACGCGGCAG
GCGGGAGGCTTCACCGCGGAGGTGAATCCTGGCGTGACCGACCTCAGCGAGCGGGTCGATGTGAAAATGACA
GGACGAGCCTTAGACATCATGCCGCAGGTGGTAAGTCACATTTATCGATAA
Translation:
MDSHSPIATVAQALRRAERILVITGAGLSADSGMPTYRGLGGLYNGRTEEGLPIEAALSGPMLRRDPALCWK
YLAELGKACLAARPNAGHEAIAELQKRKPECWVLTQNIDGFHRQAGSPAERLIEIHGELAPLYCQSCGAESG
GLEEHLHGQLPPRCAACGGVLRPPVVLFEEMLPEEAIDTLYRELRKGFDAVLVVGTTASFPYIVEPVLRTRQ
AGGFTAEVNPGVTDLSERVDVKMTGRALDIMPQVVSHIYR*
AnnotationID:3055GeneID:3047
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 17:05:43
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, Sir2 family
Cell Localization:()
Synonyms:PA1197
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0846,cd01407
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55224.1| (AE016861) transcriptional regulator, Sir2 family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 248

 Score =  366 bits (940), Expect = e-101
 Identities = 172/244 (70%), Positives = 202/244 (82%)








 
Structural Features:
COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family 
[Transcription]
CD-Length = 250 residues,  98.8% aligned
Score =  237 bits (606), Expect = 1e-63
Identities = 90/254 (35%), Positives = 135/254 (53%), Gaps = 10/254 (3%)

cd01407, SIR2-fam, SIR2 family of proteins includes silent information regulator 2 (Sir2) 
enzymes which catalyze NAD+-dependent protein/histone deacetylation.
CD-Length = 218 residues, 100.0% aligned
Score =  208 bits (531), Expect = 4e-55






   
Genomic Context:






   
Comment:


















    ReferenceID:6097




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23239




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37559




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3047_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3047
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4918
                           PA1197_tr
                           translation of PA1197
                           256
                           99.60
                           99.60
                           0
                           1333.0
     

     
     
139149
                           gb|AAG04586.1|AE004550_2
                           (AE004550) hypothetical protein PA1197 [Pseudomonas aeruginosa PAO1]
                           256
                           99.60
                           99.60
                           0
                           1333.0
     

     
     
139150
                           gb|AAO55224.1|
                           (AE016861) transcriptional regulator, Sir2 family [Pseudomonas syringae pv. tomato str. DC3000]
                           256
                           67.18
                           79.29
                           8
                           939.0
     

     






      

          
GC ORFID: 46049How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1197Glimmer Score: 

          
Start: 614282Stop: 615052

          
Length: 771


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1197 translation of PA1197Homolog Bit Score 518.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6464 (ORF: BLASTX 367.0), t_PA1197 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGACAGCCACAGCCCGATCGCCACCGTCGCCCAGGCCCTGCGGCGCGCCGAACGCATCCTGGTCATCACC 
GGCGCCGGCCTCTCCGCGGACTCCGGTATGCCCACCTATCGCGGCCTCGGCGGTCTCTACAACGGTCGCACG 
GAAGAGGGCCTGCCGATCGAGGCGGCGCTTTCCGGACCGATGCTGCGGCGCGATCCGGCGCTGTGCTGGAAG 
TACCTCGCGGAACTCGGCAAGGCTTGCCTGGCGGCCCGACCCAACGCCGGCCACGAAGCCATTGCCGAGTTG 
CAGAAGCGCAAGCCGGAATGCTGGGTGCTGACCCAGAACATCGACGGCTTCCATCGCCAGGCCGGCTCGCCG 
GCCGAGCGGCTGATCGAGATCCATGGCGAACTGGCGCCGCTCTACTGCCAGTCCTGCGGTGCCGAGAGCGGC 
GGCCTGGAGGAACATCTGCACGGCCAGTTGCCGCCGCGCTGCGCGGCTTGCGGCGGGGTGCTGCGGCCACCG 
GTAGTGCTGTTCGAGGAAATGTTGCCGGAAGAGGCGATCGATACCCTGTACCGCGAATTGCGCAAAGGCTTC 
GATGCGGTGCTGGTGGTGGGAACCACCGCGAGCTTCCCCTATATCGTCGAACCGGTGCTGCGCACGCGGCAG 
GCGGGAGGCTTCACCGCGGAGGTGAATCCTGGCGTGACCGACCTCAGCGAGCGGGTCGATGTGAAAATGACA 
GGACGAGCCTTAGACATCATGCCGCAGGTGGTAAGTCACATTTATCGATAA