ViewGene
Locus Name:
GeneID:
Location:

GeneID:3046
TrivialName: PA14_54770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54770
PAO1 Ortholog Locus:PA0735
Sequence Length:816
Protein Length:271
Start: 4854862
Stop: 4855677
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04124.1|AE004508_9 (AE004508) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 262/271 (96%), Positives = 265/271 (97%)
Sequence:
ATGAATCGCAACCGTCGCAACGCCCTGATCGCCGGCAGCCTCCTGCTGCTGGCGGCGAACCTGGCCGCCCTC
GGTGGCGTCGCCTGGAACCGGTCCGGCGAGGCCGAAAGCAAGTTGGTGCTCAGTCAGCGCGAACTCCAGCGC
AACTGGTCCTACGGCTTCTGGAGCGAAGAGAACAGTGGCGTCGAACTGCGCCTGGAGCTTCGCTCGCCGAAC
GGCGAGCCGCCCAATGACCTCGCGCCCCCGCTGCCGCCCGAGCAGATGCGCGCCCTCGGTTTCAGCATCCCG
GACGCGCTCGACGAAGAGAGCGTACGGCGCTACCGCCGCCAACAGGAAAAACAGGTGCTGCTGGTCCTGGAG
CTCGACGGCCCGGCCTATCGCCGCGAAGTACGCCTGGCCGAGGAGCGCCTGGCCGAGGCCCACGCCCGCAGC
AAGGCCCTGCCCAAGGACGAAATGCTGTCCAGCCAGATGGAAGCCGCTCGCCACCAACTGAAGCATGAGCAG
GGAGAGGCCAGCCGACTGTTCATCGTCGACGCCGGCCTCGACCTGGCCGCCCTGCGCCAGCGCTACCCCGAG
CGCCAGCGCTATGCCATCGTCAAGGGCCGAGTGCGTCCCTGGTCCGCGGTCGACGAAGGCAGGACGCTGGTC
GGCGGCTACGTCAGCCGTACCGACCTCGCCGCGATCAACGTGCCACGACAATGGCACGCGGTATTCGCCAAG
GTCGACGGACAAAACTACCGGCTAGCGCCGCTGGAACTGCATCTCAGCTTCGGCCTGCGCCTGGAGCCCTGG
ATCACCAACGCCGTTCGCCGCTGA
Translation:
MNRNRRNALIAGSLLLLAANLAALGGVAWNRSGEAESKLVLSQRELQRNWSYGFWSEENSGVELRLELRSPN
GEPPNDLAPPLPPEQMRALGFSIPDALDEESVRRYRRQQEKQVLLVLELDGPAYRREVRLAEERLAEAHARS
KALPKDEMLSSQMEAARHQLKHEQGEASRLFIVDAGLDLAALRQRYPERQRYAIVKGRVRPWSAVDEGRTLV
GGYVSRTDLAAINVPRQWHAVFAKVDGQNYRLAPLELHLSFGLRLEPWITNAVRR*
AnnotationID:3054GeneID:3046
AnnotatorUID: danlee
Modification Date/Time: 2004-03-26 16:04:36
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0735
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6095




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23237




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3046
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4917
                           PA0735_tr
                           translation of PA0735
                           271
                           96.67
                           97.78
                           0
                           1335.0
     

     
     
139148
                           gb|AAG04124.1|AE004508_9
                           (AE004508) hypothetical protein PA0735 [Pseudomonas aeruginosa PAO1]
                           271
                           96.67
                           97.78
                           0
                           1335.0
     

     






      

          
GC ORFID: 46048How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0735Glimmer Score: 

          
Start: 99045Stop: 98230

          
Length: 816


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0735 translation of PA0735Homolog Bit Score 518.0

          
Other Homologs:  t_PA0735 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCGCAACCGTCGCAACGCCCTGATCGCCGGCAGCCTCCTGCTGCTGGCGGCGAACCTGGCCGCCCTC 
GGTGGCGTCGCCTGGAACCGGTCCGGCGAGGCCGAAAGCAAGTTGGTGCTCAGTCAGCGCGAACTCCAGCGC 
AACTGGTCCTACGGCTTCTGGAGCGAAGAGAACAGTGGCGTCGAACTGCGCCTGGAGCTTCGCTCGCCGAAC 
GGCGAGCCGCCCAATGACCTCGCGCCCCCGCTGCCGCCCGAGCAGATGCGCGCCCTCGGTTTCAGCATCCCG 
GACGCGCTCGACGAAGAGAGCGTACGGCGCTACCGCCGCCAACAGGAAAAACAGGTGCTGCTGGTCCTGGAG 
CTCGACGGCCCGGCCTATCGCCGCGAAGTACGCCTGGCCGAGGAGCGCCTGGCCGAGGCCCACGCCCGCAGC 
AAGGCCCTGCCCAAGGACGAAATGCTGTCCAGCCAGATGGAAGCCGCTCGCCACCAACTGAAGCATGAGCAG 
GGAGAGGCCAGCCGACTGTTCATCGTCGACGCCGGCCTCGACCTGGCCGCCCTGCGCCAGCGCTACCCCGAG 
CGCCAGCGCTATGCCATCGTCAAGGGCCGAGTGCGTCCCTGGTCCGCGGTCGACGAAGGCAGGACGCTGGTC 
GGCGGCTACGTCAGCCGTACCGACCTCGCCGCGATCAACGTGCCACGACAATGGCACGCGGTATTCGCCAAG 
GTCGACGGACAAAACTACCGGCTAGCGCCGCTGGAACTGCATCTCAGCTTCGGCCTGCGCCTGGAGCCCTGG 
ATCACCAACGCCGTTCGCCGCTGA