ViewGene

Locus Name:
GeneID:
Location:

GeneID:3045
TrivialName: PA14_18590
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18590
PAO1 Ortholog Locus:PA3539
Sequence Length:780
Protein Length:259
Start: 1596990
Stop: 1596211
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06927.1|AE004774_5 (AE004774) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 258/259 (99%), Positives = 258/259 (99%)
Sequence:
ATGCTGATGGTGATTTCCCCCGCCAAGACCCTGGACTACGAGACCCCGCCGGTCACCCACCGCTTCACCCAG
CCGCAATACCTGGACCACGCCCAGGAACTGATCCAGCAACTGCGCCAGCTCACCCCGCTGCAGATCAGCGAA
CTGATGAAGCTTTCCGACAAGCTCGCCGGCCTGAATGCCGCTCGCTACGCCAGCTGGCATCCGGAGTTCACC
CCGGAGAACGCCAAGCAGGCGTTGCTCGCCTTCAAGGGCGATGTCTACACCGGCCTCAACGCGGAAGACTTC
GGCGAGGACGATTTCGCCTTCGCCCAGGATCACCTGTGCATGCTCTCCGGTCTCTACGGCGTGCTGCGCCCG
CTCGACCTCATGCAGCCCTATCGACTGGAAATGGGCACCCGCCTGGCCAACGCCCGTGGCAAGGATCTCTAC
GCCTTCTGGGGCGAGCGTATCAGCCAGTGGCTGAACGAAGCGCTGGCCGCCCAGGGCGACGACGTGCTGCTC
AACCTGGCTTCCAACGAGTACTTCGGCGCGGTGAAGCGCAAGGCGCTGCAAGCGCGGGTCATCGACACCGAG
TTCAAGGACCTGAAGAACGGCCAGTACAAGATCATCAGCTTCTACGCCAAGAAGGCTCGCGGCATGATGGCT
CGCTACGTGATCCGCGAGCGCCTGCGCGACCCGGCCGGGCTGAAGGACTTCAACGCCCACGGCTATTACTTC
AGCGCCGAGCAGTCCGGCCCGGATCAGCTGGTATTCCTCAGGGACGCCCCGCAAGACTGA
Translation:
MLMVISPAKTLDYETPPVTHRFTQPQYLDHAQELIQQLRQLTPLQISELMKLSDKLAGLNAARYASWHPEFT
PENAKQALLAFKGDVYTGLNAEDFGEDDFAFAQDHLCMLSGLYGVLRPLDLMQPYRLEMGTRLANARGKDLY
AFWGERISQWLNEALAAQGDDVLLNLASNEYFGAVKRKALQARVIDTEFKDLKNGQYKIISFYAKKARGMMA
RYVIRERLRDPAGLKDFNAHGYYFSAEQSGPDQLVFLRDAPQD*
AnnotationID:3053GeneID:3045
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 18:06:11
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3539
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN78510.1|AE016755_10 (AE016755) Protein yaaA [Escherichia coli CFT073]
          Length = 258

 Score =  341 bits (874), Expect = 3e-93
 Identities = 168/254 (66%), Positives = 203/254 (79%)

Structural Features:
Genomic Context:
Comment:
ReferenceID:6093
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23235
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32025
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3045_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3045

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4916 PA3539_tr translation of PA3539 259 99.61 99.61 0 1337.0
139115 gb|AAG06927.1|AE004774_5 (AE004774) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 259 99.61 99.61 0 1337.0
139116 gb|AAN66913.1|AE016320_1 (AE016778) conserved hypothetical protein [Pseudomonas putida KT2440] 259 78.76 88.03 0 1064.0
139117 gb|AAO54769.1| (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 259 77.22 86.48 0 1043.0
139122 dbj|BAB33429.1| (AP002550) hypothetical protein [Escherichia coli O157:H7] 259 64.86 78.76 1 869.0
GC ORFID: 46047How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3539Glimmer Score:
Start: 3356944Stop: 3357723
Length: 780
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3539 translation of PA3539Homolog Bit Score 519.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4990 (ORF: BLASTX 406.0), t_PA3539 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGATGGTGATTTCCCCCGCCAAGACCCTGGACTACGAGACCCCGCCGGTCACCCACCGCTTCACCCAG
CCGCAATACCTGGACCACGCCCAGGAACTGATCCAGCAACTGCGCCAGCTCACCCCGCTGCAGATCAGCGAA
CTGATGAAGCTTTCCGACAAGCTCGCCGGCCTGAATGCCGCTCGCTACGCCAGCTGGCATCCGGAGTTCACC
CCGGAGAACGCCAAGCAGGCGTTGCTCGCCTTCAAGGGCGATGTCTACACCGGCCTCAACGCGGAAGACTTC
GGCGAGGACGATTTCGCCTTCGCCCAGGATCACCTGTGCATGCTCTCCGGTCTCTACGGCGTGCTGCGCCCG
CTCGACCTCATGCAGCCCTATCGACTGGAAATGGGCACCCGCCTGGCCAACGCCCGTGGCAAGGATCTCTAC
GCCTTCTGGGGCGAGCGTATCAGCCAGTGGCTGAACGAAGCGCTGGCCGCCCAGGGCGACGACGTGCTGCTC
AACCTGGCTTCCAACGAGTACTTCGGCGCGGTGAAGCGCAAGGCGCTGCAAGCGCGGGTCATCGACACCGAG
TTCAAGGACCTGAAGAACGGCCAGTACAAGATCATCAGCTTCTACGCCAAGAAGGCTCGCGGCATGATGGCT
CGCTACGTGATCCGCGAGCGCCTGCGCGACCCGGCCGGGCTGAAGGACTTCAACGCCCACGGCTATTACTTC
AGCGCCGAGCAGTCCGGCCCGGATCAGCTGGTATTCCTCAGGGACGCCCCGCAAGACTGA