ViewGene
Locus Name:
GeneID:
Location:

GeneID:3043
TrivialName: PA14_42780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42780
PAO1 Ortholog Locus:PA1679
Sequence Length:780
Protein Length:259
Start: 3805104
Stop: 3805883
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05068.1|AE004595_7 (AE004595) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 259/259 (100%), Positives = 259/259 (100%)
Sequence:
ATGATCGATAGCGATACCCAACCGGCCGCAGAAGAAGCCGAGAAGAAACCGCCGCACCCCTGGGCCGAACTG
GCGCCGGAGCATTTCCGCCTGCTCCGCCTGGCGCCGCTGCCCACCGACCGCGCGACCGGCGCCCGCCCCCTG
CGCTTCGTCCAGCTCGGCAGGGTCGAACGGCACAGCGCGGACCAGAGCCTGCTGCGCCTGAGCATCCAGGTG
CCAGGCCTGATGCTGCGCAAGGAGCAGAACCTGCTGGAGGTCTGGGCCGATCATCGCAACAAGGAAGTACGT
TTCGGTTCGGACGCCGGGCTCAGCCTGGAACCCTTGAACCGCGGGCTGGGCCGTTTCCTGCTGGCCCAGGCG
ATCGCCTGGGCGCAACGACGCTGGGCCCACTACAAGGTGGAAGGCGGCGCACTGGCGCTGAAGGATGGCCTG
ACCGAAGACGCACGCCTGCGCCGCGACCATTTCATCCGCGCCCAGGGCTTCGACGTCAGCTATGAGGACCAG
CGGTTGCTCAAGGCCCGCTACAGCGCCGGCCGGGTCAGTGAGCTGCACAGCGATTGGCACAAGGACAAGGTG
CAGATCGTGCCGCTGCTGGACGCCGCGGCGATGCTGGAACAGGCCGAGCAGACCCTGCAGGCCCAGGATGCG
GAGATCCGCCAACTGGAACAGCGCATCAACCACTACCGCCGCGACGACACCAGCTTGCGCTTCACCATCGCC
TGCCTGACCGCCTTCGCGGTGTTCCAGGCCGGCCTGCTGATCTGGATCGCCACTCACTGA
Translation:
MIDSDTQPAAEEAEKKPPHPWAELAPEHFRLLRLAPLPTDRATGARPLRFVQLGRVERHSADQSLLRLSIQV
PGLMLRKEQNLLEVWADHRNKEVRFGSDAGLSLEPLNRGLGRFLLAQAIAWAQRRWAHYKVEGGALALKDGL
TEDARLRRDHFIRAQGFDVSYEDQRLLKARYSAGRVSELHSDWHKDKVQIVPLLDAAAMLEQAEQTLQAQDA
EIRQLEQRINHYRRDDTSLRFTIACLTAFAVFQAGLLIWIATH*
AnnotationID:3051GeneID:3043
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 19:07:34
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1679
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6089




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23231




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3043
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4914
                           PA1679_tr
                           translation of PA1679
                           259
                           99.99
                           99.99
                           0
                           1337.0
     

     
     
139101
                           gb|AAG05068.1|AE004595_7
                           (AE004595) hypothetical protein PA1679 [Pseudomonas aeruginosa PAO1]
                           259
                           99.99
                           99.99
                           0
                           1337.0
     

     
     
139102
                           gb|AAO55559.1|
                           (AE016863) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           267
                           57.30
                           74.53
                           8
                           838.0
     

     
     
139103
                           gb|AAN67447.1|AE016372_2
                           (AE016780) conserved hypothetical protein [Pseudomonas putida KT2440]
                           261
                           55.55
                           72.41
                           3
                           749.0
     

     






      

          
GC ORFID: 46045How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1679Glimmer Score: 

          
Start: 1148805Stop: 1148026

          
Length: 780


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1679 translation of PA1679Homolog Bit Score 519.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene553 (ORF: BLASTX 323.0), t_PA1679 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGATAGCGATACCCAACCGGCCGCAGAAGAAGCCGAGAAGAAACCGCCGCACCCCTGGGCCGAACTG 
GCGCCGGAGCATTTCCGCCTGCTCCGCCTGGCGCCGCTGCCCACCGACCGCGCGACCGGCGCCCGCCCCCTG 
CGCTTCGTCCAGCTCGGCAGGGTCGAACGGCACAGCGCGGACCAGAGCCTGCTGCGCCTGAGCATCCAGGTG 
CCAGGCCTGATGCTGCGCAAGGAGCAGAACCTGCTGGAGGTCTGGGCCGATCATCGCAACAAGGAAGTACGT 
TTCGGTTCGGACGCCGGGCTCAGCCTGGAACCCTTGAACCGCGGGCTGGGCCGTTTCCTGCTGGCCCAGGCG 
ATCGCCTGGGCGCAACGACGCTGGGCCCACTACAAGGTGGAAGGCGGCGCACTGGCGCTGAAGGATGGCCTG 
ACCGAAGACGCACGCCTGCGCCGCGACCATTTCATCCGCGCCCAGGGCTTCGACGTCAGCTATGAGGACCAG 
CGGTTGCTCAAGGCCCGCTACAGCGCCGGCCGGGTCAGTGAGCTGCACAGCGATTGGCACAAGGACAAGGTG 
CAGATCGTGCCGCTGCTGGACGCCGCGGCGATGCTGGAACAGGCCGAGCAGACCCTGCAGGCCCAGGATGCG 
GAGATCCGCCAACTGGAACAGCGCATCAACCACTACCGCCGCGACGACACCAGCTTGCGCTTCACCATCGCC 
TGCCTGACCGCCTTCGCGGTGTTCCAGGCCGGCCTGCTGATCTGGATCGCCACTCACTGA