ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3042

TrivialName: PA14_55160

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_55160

PAO1 Ortholog Locus: PA0707

Sequence Length: 780

Protein Length: 259

Start: 4899424

Stop: 4900203

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: emb|CAA30927.1| (X12366) unnamed protein product [Pseudomonas aeruginosa] Identities = 258/259 (99%), Positives = 258/259 (99%)

Sequence:

ATGACTGCGACAGACAGAACGCCCCCGCCATTGAAATGGCTCTGCCTCGGCAACCGTGATGCGAACGACGGA
TTCGAGCTCTTCGCCCATGGCATCTATGCGAGGAACGGCGCGTTGGTCGGCAGCAAGCTCTCCCTGCGCGAA
CGGCGCCAGCGCGTCGACCTGTCGGCCTTCCTTTCCGGCGCACCGCCGCTGCTTGCCGAGGCGGCGGTCAAG
CACCTGCTGGCGCGCCTCCTGTGCGTGCACCGGCACAACACCGACCTCGAACTGCTCGGCAAGAACTTCATT
CCCCTGCATGCCAGCAGCCTGGGCAACGCCGGGGTCTGCGAGCGGATCCTGGCCTCGGCCAGGCAATTGCAG
CAGCACCAGGTCGAACTCTGCCTGCTGCTGGCCATCGACGAGCAGGAACCCGCCTCGGCGGAGTACCTGGCG
TCCCTCGCCCGGCTACGCGACAGCGGCGTGCGCATCGCGCTGCACCCGCAACGCATCGATACCGACGCTCGC
CAGTGCTTCGCCGAGGTCGACGCCGGCCTCTGCGATTACCTGGGCCTGGACGCGCGCCTGCTTGCCCCCGGC
CCGCTGACGCGTAACCTGCGCCAGCGCAAGAGCATCGAGTACCTGAACCGGCTGCTGGTAGCACAGGACATC
CAGATGCTTTGCCTCAACGTCGACAATGAGGAACTGCACCAACAAGCCAACGCACTCCCCTTCGCCTTACGT
CATGGCAGGCACTATTCGGAGCCTTTCCAGGCCTGGCCGTTCAGCAGTCCGGCCTGCTGA

Translation:

MTATDRTPPPLKWLCLGNRDANDGFELFAHGIYARNGALVGSKLSLRERRQRVDLSAFLSGAPPLLAEAAVK
HLLARLLCVHRHNTDLELLGKNFIPLHASSLGNAGVCERILASARQLQQHQVELCLLLAIDEQEPASAEYLA
SLARLRDSGVRIALHPQRIDTDARQCFAEVDAGLCDYLGLDARLLAPGPLTRNLRQRKSIEYLNRLLVAQDI
QMLCLNVDNEELHQQANALPFALRHGRHYSEPFQAWPFSSPAC*

AnnotationID:3050 GeneID:3042

AnnotatorUID: danlee

Modification Date/Time: 2004-03-11 18:06:14

Gene Name: toxR

Confidence Code: 1

GeneProduct: transcriptional regulator ToxR

Cell Localization: (5) Inner membrane-associated

Synonyms: PA0707, regA

Cell Localization Confidence Code: 1

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name: transcriptional regulator RegA�

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:6087

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:23229

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:3042

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

139098 emb|CAA30927.1| (X12366) unnamed protein product [Pseudomonas aeruginosa] 259 99.61 99.61 0 1341.0

4913 PA0707_tr translation of PA0707 259 99.22 99.22 0 1337.0

139099 gb|AAG04096.1|AE004506_6 (AE004506) transcriptional regulator ToxR [Pseudomonas aeruginosa PAO1] 259 99.22 99.22 0 1337.0

139100 gb|AAA02982.1| (M31686) ToxR protein [Pseudomonas aeruginosa] 264 78.78 79.16 45 1023.0

GC ORFID: `46044`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA0707`	Glimmer Score:
Start: `54483`	Stop: `53704`
Length: `780`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA0707 translation of PA0707`	Homolog Bit Score `519.0`
Other Homologs: `t_PA0707 (ORF: GLIMMER)`
GC ORF Sequence
ATGACTGCGACAGACAGAACGCCCCCGCCATTGAAATGGCTCTGCCTCGGCAACCGTGATGCGAACGACGGA TTCGAGCTCTTCGCCCATGGCATCTATGCGAGGAACGGCGCGTTGGTCGGCAGCAAGCTCTCCCTGCGCGAA CGGCGCCAGCGCGTCGACCTGTCGGCCTTCCTTTCCGGCGCACCGCCGCTGCTTGCCGAGGCGGCGGTCAAG CACCTGCTGGCGCGCCTCCTGTGCGTGCACCGGCACAACACCGACCTCGAACTGCTCGGCAAGAACTTCATT CCCCTGCATGCCAGCAGCCTGGGCAACGCCGGGGTCTGCGAGCGGATCCTGGCCTCGGCCAGGCAATTGCAG CAGCACCAGGTCGAACTCTGCCTGCTGCTGGCCATCGACGAGCAGGAACCCGCCTCGGCGGAGTACCTGGCG TCCCTCGCCCGGCTACGCGACAGCGGCGTGCGCATCGCGCTGCACCCGCAACGCATCGATACCGACGCTCGC CAGTGCTTCGCCGAGGTCGACGCCGGCCTCTGCGATTACCTGGGCCTGGACGCGCGCCTGCTTGCCCCCGGC CCGCTGACGCGTAACCTGCGCCAGCGCAAGAGCATCGAGTACCTGAACCGGCTGCTGGTAGCACAGGACATC CAGATGCTTTGCCTCAACGTCGACAATGAGGAACTGCACCAACAAGCCAACGCACTCCCCTTCGCCTTACGT CATGGCAGGCACTATTCGGAGCCTTTCCAGGCCTGGCCGTTCAGCAGTCCGGCCTGCTGA