ViewGene
Locus Name:
GeneID:
Location:

GeneID:3040
TrivialName: PA14_02840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02840
PAO1 Ortholog Locus:PA0231
Sequence Length:792
Protein Length:263
Start: 251329
Stop: 252120
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03620.1|AE004461_3 (AE004461) beta-ketoadipate enol-lactone hydrolase [Pseudomonas aeruginosa PAO1]
Identities = 262/263 (99%), Positives = 263/263 (100%)
Sequence:
GTGCCAACCGTACGCCTCGCCGACGGCGACCTGAACTACTCCCTGGAAGGACCGGCCGGCGCGCCGGTCCTG
CTGTTGTCAAACTCGCTGGGCACCGACCTGGGCATGTGGGACACGCAGATCCCCGCACTCACCGCCCACTTC
CGCGTGCTGCGCTACGACACCCGCGGCCACGGCGCCTCGCTGGTCACCCCCGGACCGTACGCCATCGGCCAG
CTCGGCGCCGACGTGCTTGCCCTGCTCGATGCCCTCGACCTGCCGCGCGTGCATTTCTGCGGGCTATCCATG
GGCGGCCTGATCGGTCAGTGGCTGGGCATCCACGCCGGCGAGCGGCTCGGCCGGCTGGTGCTGTGCAACACT
GCGGCGAAGATCGCCAGCGACGAGGTCTGGAACACCCGCATCGATACCGTCCTGAAAGGCGGCGAGCAGGCC
ATGCGCGACCTGCGCGACGCCTCGGTGGCGCGCTGGTTCACCGCGGGCTTCGCCGAGCGCGAACCGGCGCAG
GTCGAGCGCATCGTCGCGATGCTCGCGGCCACCTCGCCGCAGGGCTACGCGGCCAACTGCGCTGCGGTACGC
GACGCCGACTTCCGCGAGCAGCTCGGGCTGGTCCAGGCGCCGACGCTGATCGTCGCCGGCAGCCACGATGCC
GTGACCACTCCGGACAACGCCCGCTTCATGCAGGCGCGCATCGCCGACGCGCAGTTGGTCGAGTTCGCCGCC
GCGCACCTGTCCAACGTCGAAGCGGGCGACGCCTTCAGCCGCCGCCTGGTCGATTTCCTGCTGTCCGCCTGA
Translation:
MPTVRLADGDLNYSLEGPAGAPVLLLSNSLGTDLGMWDTQIPALTAHFRVLRYDTRGHGASLVTPGPYAIGQ
LGADVLALLDALDLPRVHFCGLSMGGLIGQWLGIHAGERLGRLVLCNTAAKIASDEVWNTRIDTVLKGGEQA
MRDLRDASVARWFTAGFAEREPAQVERIVAMLAATSPQGYAANCAAVRDADFREQLGLVQAPTLIVAGSHDA
VTTPDNARFMQARIADAQLVEFAAAHLSNVEAGDAFSRRLVDFLLSA*
AnnotationID:3048GeneID:3040
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 18:06:43
Gene Name:pcaD
Confidence Code:2
GeneProduct:beta-ketoadipate enol-lactone hydrolase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0596
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14727




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17040




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search (BLASTP).






    
Reference Type:Blast (text/plain)







    
Data:PA0231_CDS.cgi


    		




 
URL:

















    ReferenceID:23225




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3040
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4906
                           PA0231_tr
                           translation of PA0231
                           263
                           99.61
                           99.99
                           0
                           1338.0
     

     
     
138972
                           gb|AAG03620.1|AE004461_3
                           (AE004461) beta-ketoadipate enol-lactone hydrolase [Pseudomonas aeruginosa PAO1]
                           263
                           99.23
                           99.99
                           0
                           1335.0
     

     
     
138974
                           gb|AAL02408.1|
                           (AY044272) 3-oxoadipate enol-lactone hydrolase [Pseudomonas sp. B13]
                           263
                           74.52
                           84.03
                           1
                           1009.0
     

     
     
138973
                           gb|AAN67003.1|AE016328_8
                           (AE016779) 3-oxoadipate enol-lactone hydrolase [Pseudomonas putida KT2440]
                           263
                           73.76
                           84.03
                           0
                           1013.0
     

     
     
138975
                           gb|AAO56625.1|
                           (AE016867) 3-oxoadipate enol-lactone hydrolase [Pseudomonas syringae pv. tomato str. DC3000]
                           263
                           66.53
                           78.70
                           0
                           900.0
     

     






      

          
GC ORFID: 46042How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0231Glimmer Score: 

          
Start: 6052670Stop: 6053461

          
Length: 792


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0231 translation of PA0231Homolog Bit Score 520.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7253 (ORF: BLASTX 347.0), t_PA0480 (ORF: BLASTX 246.0), t_PA0231 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCAACCGTACGCCTCGCCGACGGCGACCTGAACTACTCCCTGGAAGGACCGGCCGGCGCGCCGGTCCTG 
CTGTTGTCAAACTCGCTGGGCACCGACCTGGGCATGTGGGACACGCAGATCCCCGCACTCACCGCCCACTTC 
CGCGTGCTGCGCTACGACACCCGCGGCCACGGCGCCTCGCTGGTCACCCCCGGACCGTACGCCATCGGCCAG 
CTCGGCGCCGACGTGCTTGCCCTGCTCGATGCCCTCGACCTGCCGCGCGTGCATTTCTGCGGGCTATCCATG 
GGCGGCCTGATCGGTCAGTGGCTGGGCATCCACGCCGGCGAGCGGCTCGGCCGGCTGGTGCTGTGCAACACT 
GCGGCGAAGATCGCCAGCGACGAGGTCTGGAACACCCGCATCGATACCGTCCTGAAAGGCGGCGAGCAGGCC 
ATGCGCGACCTGCGCGACGCCTCGGTGGCGCGCTGGTTCACCGCGGGCTTCGCCGAGCGCGAACCGGCGCAG 
GTCGAGCGCATCGTCGCGATGCTCGCGGCCACCTCGCCGCAGGGCTACGCGGCCAACTGCGCTGCGGTACGC 
GACGCCGACTTCCGCGAGCAGCTCGGGCTGGTCCAGGCGCCGACGCTGATCGTCGCCGGCAGCCACGATGCC 
GTGACCACTCCGGACAACGCCCGCTTCATGCAGGCGCGCATCGCCGACGCGCAGTTGGTCGAGTTCGCCGCC 
GCGCACCTGTCCAACGTCGAAGCGGGCGACGCCTTCAGCCGCCGCCTGGTCGATTTCCTGCTGTCCGCCTGA