ViewGene
Locus Name:
GeneID:
Location:

GeneID:304
TrivialName: PA14_36420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36420
PAO1 Ortholog Locus:PA2177
Sequence Length:2100
Protein Length:699
Start: 3245934
Stop: 3243835
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05565.1|AE004644_12 (AE004644) probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
Identities = 695/699 (99%), Positives = 696/699 (99%)
Sequence:
ATGGAATTCGCCGGCCGCGCCGGGGTCTTCCGAAAGGTCGGCCAAGTTCCTGGGGCGAGCCAGCGAGCGGCC
GGAAGACGTTCTTCGTACTACCTTGCTGGGTGTGCCTTGCAGCCCGGGTCGAGCAGCCGACGAGTGAACACG
TCCATGAAAACCACAAGAAAACCGAAAGTCCCCTTGAACCAGGCCACGCGCAACCGCCTGCTCGACGAAGCG
GTCGACGACTACGCGATCCACACGCTGGACAGCGCTGGCCGTATCGCCAGCTGGAGCGCCGGCGCGGCGCGC
CTGTTCGGCCACGACGCGAGCGAGATCCTCGGCTGCGACTACGCCTGCTTTCATACCCGCAAGGACCGCGAC
GCCGGCGTTCCGCAACAGGCGCTGCGCCAGGCGGATGCCGAGGGCCGCTTCGAGACCGAGGGCTGGCGGGTG
CGCAGCAACGGCAAGCGCTTCTGGGCGCAGGTGGTGATCGACGCCATCCGCGACAGCCAGGGCCAGTTGCTC
GGCTTCGCCCAGCTGATCCACGACCTCAGCGAAGGGCGCGCGGCCAAGGAGGCGCTGCGGCGCAGCCAGGAG
CAGTTCCGCCTGCTGGTGCAGAGCGTTACCGACTACGCCATCTACATGCTCGACCACCGCGGGCGGATCACC
AACTGGAACCTCGGCGCCCAGCGGATCAAGGGCTACCTGCCGGAAGAGGTGATCGGCCGGCACTTCTCCTGC
TTCTACACCCCCGAAGACCGCGAGGCCGGCGAACCGGCCCGCGGCCTGGCCGCCGCCGAACGCGAAGGGCGT
TTCGAGAAGGAAGGCTGGCGGGTGCGCAAGGACGGCAGTCGCTTCTGGGCCAACGTGGTGATCGATCCGATC
CGCGACAGCGATGGCCGGCTGATCGGCTTCGCCAAGGTAACCCGTGACATCACCCACCGGATCGAAGCCGAA
CGCGAACTGGAACGGGCCCGCCAGGAGCTGTTCCAGGCCCAGAAGATGGAGTCCCTGGGGCACCTCACCGGC
GGCGTGGCCCACGACTTCAACAACCTGCTGACGGTGATCATCGGCAGCCTCGGGCTGCTGAAGAAACGCCTG
CCCGGCGACCAGCGCACCGCCGACCTCTTGCAGAACGCCCTGGAGGCCGCCCAGCGCGGCGCCAACCTGACC
CAGCGGATGCTTTCCTTCGCCCGCAAGCAGCGTCTCGATCCGCAGCCCTGCGCGATCCCCGACCTGCTGCGC
GGGATGACCGACCTGCTGATCCATTCCCTGGGACCGAGCGTATCGATCGAGACGCGCTTTCCCCTGGATCTC
GACCTCGGCCTGACCGACGCCAACCAGCTCGAACTATCCATCATCAACCTTGCCACCAACGCCCGCGACGCC
ATGCCCAACGGCGGGCGCATCGTCTTTTCCGCGAGCAACCAGCGGGTGCCGGCGGACAATCCCCATCGCCTC
GCACCGGGCAACTATATCTGCCTGAGCATCAGCGACACCGGCAGCGGCATGGACGAGGAAACCCTGCGCCGT
GCGGTGGAACCCTTCTACACCACCAAGGGGGTGGGGCGTGGCACCGGGCTGGGCCTGTCGATCGTCGACGGC
CTCGCCGAGCAGCTCGGCGGCCGGCTCACCCTGGAGAGCCAGCCGGGCGTCGGCACCACCGCGAACATCTGG
ATACCCGCCGTCCCGCGAACCCCGGAAAGCGCCCGTACGGGCAATGGCGCGACGCCGCAGGCGCCCAGCGAA
AGCGAGCGGGTGCGCTTGTCCTGTCGAGTACTGGTGGTGGACGACGACCCGCTGGTGTTGAACAACACCGCG
GCGATGCTGGAGGACCTCGGTTGCTCGGTACTCAAGGCCGACTCCGGCAGCCTGGCCCTGGAGATTCTCACG
GCGACGCCGGAACTGGACATCCTCCTGACCGACCAGGCGATGCCACGGATGAACGGCAGCCAGTTGGTGGAG
CGGGTCATGGCCCAGGGCCGGCCGCTGAAGATGGCCCTGGCCACCGGCTTCGCGGAAAAGATCGAAGGCGCG
GCGGCACAGTTGCCCAAGCTGGCCAAGCCGTTCGGCCAGGAAGAGTTGTACCTGTTCCTGACCGGCACACTG
AAGGCCGGCTGA
Translation:
MEFAGRAGVFRKVGQVPGASQRAAGRRSSYYLAGCALQPGSSSRRVNTSMKTTRKPKVPLNQATRNRLLDEA
VDDYAIHTLDSAGRIASWSAGAARLFGHDASEILGCDYACFHTRKDRDAGVPQQALRQADAEGRFETEGWRV
RSNGKRFWAQVVIDAIRDSQGQLLGFAQLIHDLSEGRAAKEALRRSQEQFRLLVQSVTDYAIYMLDHRGRIT
NWNLGAQRIKGYLPEEVIGRHFSCFYTPEDREAGEPARGLAAAEREGRFEKEGWRVRKDGSRFWANVVIDPI
RDSDGRLIGFAKVTRDITHRIEAERELERARQELFQAQKMESLGHLTGGVAHDFNNLLTVIIGSLGLLKKRL
PGDQRTADLLQNALEAAQRGANLTQRMLSFARKQRLDPQPCAIPDLLRGMTDLLIHSLGPSVSIETRFPLDL
DLGLTDANQLELSIINLATNARDAMPNGGRIVFSASNQRVPADNPHRLAPGNYICLSISDTGSGMDEETLRR
AVEPFYTTKGVGRGTGLGLSIVDGLAEQLGGRLTLESQPGVGTTANIWIPAVPRTPESARTGNGATPQAPSE
SERVRLSCRVLVVDDDPLVLNNTAAMLEDLGCSVLKADSGSLALEILTATPELDILLTDQAMPRMNGSQLVE
RVMAQGRPLKMALATGFAEKIEGAAAQLPKLAKPFGQEELYLFLTGTLKAG*
AnnotationID:314GeneID:304
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 13:01:25
Gene Name:
Confidence Code:3
GeneProduct:putative histidine kinase
Cell Localization:()
Synonyms:PA2177
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:putative two-component hybrid sensor and regulator
Functional Category Confidence Code:5
COGs:smart00387
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC47441.1| (AP005942) two-component hybrid sensor and regulator
           [Bradyrhizobium japonicum USDA 110]
          Length = 634

 Score =  516 bits (1329), Expect = e-145
 Identities = 281/626 (44%), Positives = 394/626 (62%), Gaps = 19/626 (3%)

>dbj|BAC53250.1| (AP005964) two-component hybrid sensor and regulator
           [Bradyrhizobium japonicum USDA 110]
          Length = 764

 Score =  493 bits (1270), Expect = e-138
 Identities = 272/529 (51%), Positives = 355/529 (67%), Gaps = 24/529 (4%)








 
Structural Features:
smart00387, HATPase_c, Histidine kinase-like ATPases
CD-Length = 112 residues,  97.3% aligned
Score = 92.7 bits (230), Expect = 1e-19
Identities = 44/121 (36%), Positives = 63/121 (52%), Gaps = 15/121 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:611




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17753




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32558




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:304_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:304
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
496
                           PA2177_tr
                           translation of PA2177
                           699
                           99.42
                           99.57
                           0
                           3553.0
     

     
     
25166
                           gb|AAG05565.1|AE004644_12
                           (AE004644) probable sensor/response regulator hybrid [Pseudomonas aeruginosa PAO1]
                           699
                           99.42
                           99.57
                           0
                           3553.0
     

     
     
25167
                           dbj|BAC47441.1|
                           (AP005942) two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110]
                           725
                           39.31
                           54.89
                           117
                           1340.0
     

     
     
25168
                           dbj|BAC53250.1|
                           (AP005964) two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110]
                           830
                           37.71
                           49.51
                           197
                           1276.0
     

     
     
25170
                           dbj|BAC50529.1|
                           (AP005954) two-component hybrid sensor and regulator [Bradyrhizobium japonicum USDA 110]
                           724
                           30.38
                           43.50
                           240
                           946.0
     

     






      

          
GC ORFID: 43306How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2177Glimmer Score: 

          
Start: 1707981Stop: 1710080

          
Length: 2100


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2177 translation of PA2177Homolog Bit Score 1373.0

          
Other Homologs:  t_PA2177 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAATTCGCCGGCCGCGCCGGGGTCTTCCGAAAGGTCGGCCAAGTTCCTGGGGCGAGCCAGCGAGCGGCC 
GGAAGACGTTCTTCGTACTACCTTGCTGGGTGTGCCTTGCAGCCCGGGTCGAGCAGCCGACGAGTGAACACG 
TCCATGAAAACCACAAGAAAACCGAAAGTCCCCTTGAACCAGGCCACGCGCAACCGCCTGCTCGACGAAGCG 
GTCGACGACTACGCGATCCACACGCTGGACAGCGCTGGCCGTATCGCCAGCTGGAGCGCCGGCGCGGCGCGC 
CTGTTCGGCCACGACGCGAGCGAGATCCTCGGCTGCGACTACGCCTGCTTTCATACCCGCAAGGACCGCGAC 
GCCGGCGTTCCGCAACAGGCGCTGCGCCAGGCGGATGCCGAGGGCCGCTTCGAGACCGAGGGCTGGCGGGTG 
CGCAGCAACGGCAAGCGCTTCTGGGCGCAGGTGGTGATCGACGCCATCCGCGACAGCCAGGGCCAGTTGCTC 
GGCTTCGCCCAGCTGATCCACGACCTCAGCGAAGGGCGCGCGGCCAAGGAGGCGCTGCGGCGCAGCCAGGAG 
CAGTTCCGCCTGCTGGTGCAGAGCGTTACCGACTACGCCATCTACATGCTCGACCACCGCGGGCGGATCACC 
AACTGGAACCTCGGCGCCCAGCGGATCAAGGGCTACCTGCCGGAAGAGGTGATCGGCCGGCACTTCTCCTGC 
TTCTACACCCCCGAAGACCGCGAGGCCGGCGAACCGGCCCGCGGCCTGGCCGCCGCCGAACGCGAAGGGCGT 
TTCGAGAAGGAAGGCTGGCGGGTGCGCAAGGACGGCAGTCGCTTCTGGGCCAACGTGGTGATCGATCCGATC 
CGCGACAGCGATGGCCGGCTGATCGGCTTCGCCAAGGTAACCCGTGACATCACCCACCGGATCGAAGCCGAA 
CGCGAACTGGAACGGGCCCGCCAGGAGCTGTTCCAGGCCCAGAAGATGGAGTCCCTGGGGCACCTCACCGGC 
GGCGTGGCCCACGACTTCAACAACCTGCTGACGGTGATCATCGGCAGCCTCGGGCTGCTGAAGAAACGCCTG 
CCCGGCGACCAGCGCACCGCCGACCTCTTGCAGAACGCCCTGGAGGCCGCCCAGCGCGGCGCCAACCTGACC 
CAGCGGATGCTTTCCTTCGCCCGCAAGCAGCGTCTCGATCCGCAGCCCTGCGCGATCCCCGACCTGCTGCGC 
GGGATGACCGACCTGCTGATCCATTCCCTGGGACCGAGCGTATCGATCGAGACGCGCTTTCCCCTGGATCTC 
GACCTCGGCCTGACCGACGCCAACCAGCTCGAACTATCCATCATCAACCTTGCCACCAACGCCCGCGACGCC 
ATGCCCAACGGCGGGCGCATCGTCTTTTCCGCGAGCAACCAGCGGGTGCCGGCGGACAATCCCCATCGCCTC 
GCACCGGGCAACTATATCTGCCTGAGCATCAGCGACACCGGCAGCGGCATGGACGAGGAAACCCTGCGCCGT 
GCGGTGGAACCCTTCTACACCACCAAGGGGGTGGGGCGTGGCACCGGGCTGGGCCTGTCGATCGTCGACGGC 
CTCGCCGAGCAGCTCGGCGGCCGGCTCACCCTGGAGAGCCAGCCGGGCGTCGGCACCACCGCGAACATCTGG 
ATACCCGCCGTCCCGCGAACCCCGGAAAGCGCCCGTACGGGCAATGGCGCGACGCCGCAGGCGCCCAGCGAA 
AGCGAGCGGGTGCGCTTGTCCTGTCGAGTACTGGTGGTGGACGACGACCCGCTGGTGTTGAACAACACCGCG 
GCGATGCTGGAGGACCTCGGTTGCTCGGTACTCAAGGCCGACTCCGGCAGCCTGGCCCTGGAGATTCTCACG 
GCGACGCCGGAACTGGACATCCTCCTGACCGACCAGGCGATGCCACGGATGAACGGCAGCCAGTTGGTGGAG 
CGGGTCATGGCCCAGGGCCGGCCGCTGAAGATGGCCCTGGCCACCGGCTTCGCGGAAAAGATCGAAGGCGCG 
GCGGCACAGTTGCCCAAGCTGGCCAAGCCGTTCGGCCAGGAAGAGTTGTACCTGTTCCTGACCGGCACACTG 
AAGGCCGGCTGA