ViewGene
Locus Name:
GeneID:
Location:

GeneID:3038
TrivialName: PA14_62260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62260
PAO1 Ortholog Locus:PA4704
Sequence Length:798
Protein Length:265
Start: 5555041
Stop: 5555838
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08090.1|AE004884_8 (AE004884) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 264/265 (99%), Positives = 265/265 (100%)
Sequence:
ATGTATCTACTCGGCGAGCAACCGGCTTATGCCGACCAATTGATCAATCGCCTGCAGGGAATCCCTCACCGC
TTGCTCGAAGGCCTGGCACCCAGCGGCCCCGCCCTGGAACTGGAACGTAGCGACGACCTGGAACGCGAGCTG
CCCGCCGACCAGGTATTCCTGGTGGAAAGCGGCCTGCTGCATGCGCTGGTCGACGAACGCCCACTGTTCTAC
CTCCAGGAAGGCGACCTCCTCGGCCTTCGACGCGGACTCGAGCTCCCCGCCTGCCAGCATGCCAACGAAGAA
CCGATCCGCCTGCTGCCCTATTCGCGCGATGCGCTGCTCCAGCACATCCATGCTGACCAGGAACGTCAGGAA
CTGCTATTGCAGTACCTGATCGGACAGACTGCCCTGCTCGGCGATGCGCTGGCGCACCTGAAGCAGCCGGAA
GTCCGCCCGGCCACCGGCTTCCGCCACTTCGCCGCGGGCGAGGCGCTGATCCGCCAGGGCGACGATGCGGAT
CATGTATTCATCATCATCGAAGGGCACGCCGAAGCGCTGGTGGACGGCCAGAAAGTCGGCGATGTGCAGAAG
GACGAGATCTTCGGCGCCATGGCCGTGTTCACTCGCGAGAAACGCAGCGCCACGGTGGTCGCCAGCGAACCC
TGCACGGTAATGGTGATTCCCAAGGAGCAGTTCCTCGGCCTTATGCAGAACAACCCGCGAATCGCCCATAGC
CTGATCGAAGGCATGGCCCGGCGGATAGACCTGCTTAACCGGGAAGTGACCCAGCTGCGCCTGCGCCGCAGC
GCCTGA
Translation:
MYLLGEQPAYADQLINRLQGIPHRLLEGLAPSGPALELERSDDLERELPADQVFLVESGLLHALVDERPLFY
LQEGDLLGLRRGLELPACQHANEEPIRLLPYSRDALLQHIHADQERQELLLQYLIGQTALLGDALAHLKQPE
VRPATGFRHFAAGEALIRQGDDADHVFIIIEGHAEALVDGQKVGDVQKDEIFGAMAVFTREKRSATVVASEP
CTVMVIPKEQFLGLMQNNPRIAHSLIEGMARRIDLLNREVTQLRLRRSA*
AnnotationID:3046GeneID:3038
AnnotatorUID: diggins
Modification Date/Time: 2005-05-24 13:01:07
Gene Name:ppkA
Confidence Code:2
GeneProduct:cAMP-dependent protein kinase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00038
Secondary Functional Category(ies):signal transduction mechanisms
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
cd00038, CAP_ED, effector domain of the CAP family of transcription factor
CD-Length = 115 residues,  90.4% aligned
Score = 80.4 bits (198), Expect = 2e-16
Identities = 37/104 (35%), Positives = 55/104 (52%), Gaps = 5/104 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6079




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23221




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37624




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3038_cdd.html


    		




 
URL:

















    ReferenceID:38167




  
Author/Investigator(s):
        Motley ST, Lory S.





  
Title:
        Functional characterization of a serine/threonine protein kinase of Pseudomonas aeruginosa.




  
PubMed:
        10496921


MedLine:
        




    
Source:
Infect Immun. 1999 Oct;67(10):5386-94.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=10496921









           
Homologs By Global Alignment 

           

       



     
Gene ID:3038
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4904
                           PA4704_tr
                           translation of PA4704
                           265
                           99.62
                           99.99
                           0
                           1339.0
     

     
     
138902
                           gb|AAG08090.1|AE004884_8
                           (AE004884) hypothetical protein PA4704 [Pseudomonas aeruginosa PAO1]
                           265
                           99.62
                           99.99
                           0
                           1339.0
     

     
     
138903
                           gb|AAC13290.1|
                           (AF056000) cAMP-dependent protein kinase [Pseudomonas aeruginosa]
                           265
                           99.24
                           99.99
                           0
                           1338.0
     

     






      

          
GC ORFID: 46040How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4704Glimmer Score: 

          
Start: 4818721Stop: 4819518

          
Length: 798


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4704 translation of PA4704Homolog Bit Score 520.0

          
Other Homologs:  t_PA4704 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTATCTACTCGGCGAGCAACCGGCTTATGCCGACCAATTGATCAATCGCCTGCAGGGAATCCCTCACCGC 
TTGCTCGAAGGCCTGGCACCCAGCGGCCCCGCCCTGGAACTGGAACGTAGCGACGACCTGGAACGCGAGCTG 
CCCGCCGACCAGGTATTCCTGGTGGAAAGCGGCCTGCTGCATGCGCTGGTCGACGAACGCCCACTGTTCTAC 
CTCCAGGAAGGCGACCTCCTCGGCCTTCGACGCGGACTCGAGCTCCCCGCCTGCCAGCATGCCAACGAAGAA 
CCGATCCGCCTGCTGCCCTATTCGCGCGATGCGCTGCTCCAGCACATCCATGCTGACCAGGAACGTCAGGAA 
CTGCTATTGCAGTACCTGATCGGACAGACTGCCCTGCTCGGCGATGCGCTGGCGCACCTGAAGCAGCCGGAA 
GTCCGCCCGGCCACCGGCTTCCGCCACTTCGCCGCGGGCGAGGCGCTGATCCGCCAGGGCGACGATGCGGAT 
CATGTATTCATCATCATCGAAGGGCACGCCGAAGCGCTGGTGGACGGCCAGAAAGTCGGCGATGTGCAGAAG 
GACGAGATCTTCGGCGCCATGGCCGTGTTCACTCGCGAGAAACGCAGCGCCACGGTGGTCGCCAGCGAACCC 
TGCACGGTAATGGTGATTCCCAAGGAGCAGTTCCTCGGCCTTATGCAGAACAACCCGCGAATCGCCCATAGC 
CTGATCGAAGGCATGGCCCGGCGGATAGACCTGCTTAACCGGGAAGTGACCCAGCTGCGCCTGCGCCGCAGC 
GCCTGA