ViewGene
Locus Name:
GeneID:
Location:

GeneID:3037
TrivialName: PA14_09870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09870
PAO1 Ortholog Locus:PA4178
Sequence Length:744
Protein Length:247
Start: 848746
Stop: 848003
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07565.1|AE004834_5 (AE004834) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 246/247 (99%), Positives = 246/247 (99%)
Sequence:
ATGTCCGCCACTGCGCTGTACACCGACCTGTCCCACTATTACGACCTGATGTGCGCCGACATCGACTACCAG
GCGCAGAGCCACTGCGTGCGTCGCCTGCACCAGTTGTTCGGCAACCAGGGCCGGCGGCACCTGGACCTGGCC
TGCGGTACCGGCCCTCACGTGAGGCACTTCCTCGATTTCGGCTATCGCAGCGCCGGCCTGGACATCAACCAG
CCGATGCTCGACCTCGCCCGACAGCGCTGCCCCGAAGCGCACTTCAGCCGGCAGGACATGGCCGGCTTCCAG
GTGGACGAGCCGCTGGACCTGATCACCTGTTTCCTCTATTCGATCCACTACAACGCAGGGCTGGAGCGCTTG
CGCGCATGCCTGGCCAGCGTGCATGGCGCACTGGCGGATGGCGGCGTGTTCTGTTTCAACACGGTGGACAAG
GGGCAGATCGACAATCGCTCGTTCGTCCGCCATTCCGTGGAGCATCGAGGCAGCCGCTTCACCTTCGGTTCC
GGCTGGTACTACAGCGGCGAGGGCGAGCGCCAGGCGCTGCGCCTCGGTATCGAGAAAACCACGGACGGAACG
ACCCAGACCTGGGAGGACGAACACCCCATGGTCGCCCTCAGCTTCGCCGAGCTGCAGCACCTGTTGCAGACG
CATTTCGAGGTGCAGGTCTTCGAACACGACTACGAACGGATCACGCCCTGGGCCGGCAGCTCCGGGAATGCC
CTGTTCGTCTGCGTGAAGCGCTAG
Translation:
MSATALYTDLSHYYDLMCADIDYQAQSHCVRRLHQLFGNQGRRHLDLACGTGPHVRHFLDFGYRSAGLDINQ
PMLDLARQRCPEAHFSRQDMAGFQVDEPLDLITCFLYSIHYNAGLERLRACLASVHGALADGGVFCFNTVDK
GQIDNRSFVRHSVEHRGSRFTFGSGWYYSGEGERQALRLGIEKTTDGTTQTWEDEHPMVALSFAELQHLLQT
HFEVQVFEHDYERITPWAGSSGNALFVCVKR*
AnnotationID:3045GeneID:3037
AnnotatorUID: danlee
Modification Date/Time: 2006-03-20 15:03:22
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4178
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6077




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23219




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36868




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3037_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3037
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4903
                           PA4178_tr
                           translation of PA4178
                           247
                           99.59
                           99.59
                           0
                           1338.0
     

     
     
138899
                           gb|AAG07565.1|AE004834_5
                           (AE004834) hypothetical protein PA4178 [Pseudomonas aeruginosa PAO1]
                           247
                           99.59
                           99.59
                           0
                           1338.0
     

     
     
138900
                           gb|AAO59106.1|
                           (AE016854) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           260
                           77.30
                           82.30
                           13
                           1080.0
     

     
     
138901
                           gb|AAN57043.1|AE015838_5
                           (AE015838) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           261
                           62.06
                           76.24
                           14
                           895.0
     

     






      

          
GC ORFID: 46039How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4178Glimmer Score: 

          
Start: 4105191Stop: 4105934

          
Length: 744


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4178 translation of PA4178Homolog Bit Score 520.0

          
Other Homologs:  t_PA4178 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGCCACTGCGCTGTACACCGACCTGTCCCACTATTACGACCTGATGTGCGCCGACATCGACTACCAG 
GCGCAGAGCCACTGCGTGCGTCGCCTGCACCAGTTGTTCGGCAACCAGGGCCGGCGGCACCTGGACCTGGCC 
TGCGGTACCGGCCCTCACGTGAGGCACTTCCTCGATTTCGGCTATCGCAGCGCCGGCCTGGACATCAACCAG 
CCGATGCTCGACCTCGCCCGACAGCGCTGCCCCGAAGCGCACTTCAGCCGGCAGGACATGGCCGGCTTCCAG 
GTGGACGAGCCGCTGGACCTGATCACCTGTTTCCTCTATTCGATCCACTACAACGCAGGGCTGGAGCGCTTG 
CGCGCATGCCTGGCCAGCGTGCATGGCGCACTGGCGGATGGCGGCGTGTTCTGTTTCAACACGGTGGACAAG 
GGGCAGATCGACAATCGCTCGTTCGTCCGCCATTCCGTGGAGCATCGAGGCAGCCGCTTCACCTTCGGTTCC 
GGCTGGTACTACAGCGGCGAGGGCGAGCGCCAGGCGCTGCGCCTCGGTATCGAGAAAACCACGGACGGAACG 
ACCCAGACCTGGGAGGACGAACACCCCATGGTCGCCCTCAGCTTCGCCGAGCTGCAGCACCTGTTGCAGACG 
CATTTCGAGGTGCAGGTCTTCGAACACGACTACGAACGGATCACGCCCTGGGCCGGCAGCTCCGGGAATGCC 
CTGTTCGTCTGCGTGAAGCGCTAG