ViewGene
Locus Name:
GeneID:
Location:

GeneID:3036
TrivialName: PA14_10190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10190
PAO1 Ortholog Locus:PA4157
Sequence Length:789
Protein Length:262
Start: 875141
Stop: 874353
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07544.1|AE004832_4 (AE004832) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 262/262 (100%), Positives = 262/262 (100%)
Sequence:
ATGCCGGACGCCCCGGGCGAAAAGCGCTCCGGCACCATCCAGTCGGTGTCCATCGCCGCGCGCTTCCTGAAG
ACCCTGGCCAACGCCGAAGGCGAGCTGGCCCTCGGCGAAGTGGCCCGGCGCACCGGCACCGGCGGCTCCACC
GCGCACCGCTACCTGCAGAGCCTGGTGAAGGAAGGCCTGGCCCGCCAGGACCCGCTCAGCGGCCTCTACGAC
CTCGGGCCGGCGGCGCTGAGCATCGGCATAGGCGCGCTGAAGCGGATCGACGCGGTGGATATCGCCGCCCGC
CACATGAAGGCCCTGGCCCAACGGCATGCCGCCAGCGGCGGGGTGGCGATCTGGACCGAGCGCGGCCCGACC
CTGGTGCGCTGGTACCGCAGCGCCTATTTCTCGATCAACCCGCTGGCCCTGGGCGATATCCTGCCCATCGAC
AATACCGCTTGCGGCCTGGTGTTCCAGGCCTTCCTGCCGAAGGCCGTGGTCGACGCCGCGCGCAAGCAGCAA
CCGGCGCACTTCCGCGGCAGCCCGCCGAGCCGCGCGCTGCTCGACGAGGTGCGCGAGCGCTGCTGGGCCGAA
CTGACCAGCCACCTGCTGTCGAACGTCACCGGCCAGGCGGCGCCGGTGTTCGACGCCCAGCAGGAGATCGTC
TGCGCCATGACCACGGTGACCGATCTCGGCCAGTTGCAGTCGGCGGAAGACCGCGACGCGCTGTTCCACGAG
GCGCTGCAGGTCAACCAGTCCACCGGCGGCCTGGTCCTCCATCCCGGCATGCGGCCGCCGCCGCGCTGA
Translation:
MPDAPGEKRSGTIQSVSIAARFLKTLANAEGELALGEVARRTGTGGSTAHRYLQSLVKEGLARQDPLSGLYD
LGPAALSIGIGALKRIDAVDIAARHMKALAQRHAASGGVAIWTERGPTLVRWYRSAYFSINPLALGDILPID
NTACGLVFQAFLPKAVVDAARKQQPAHFRGSPPSRALLDEVRERCWAELTSHLLSNVTGQAAPVFDAQQEIV
CAMTTVTDLGQLQSAEDRDALFHEALQVNQSTGGLVLHPGMRPPPR*
AnnotationID:3044GeneID:3036
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 06:06:39
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4157
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1414,smart00346
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD17855.1| (AL646080) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
           solanacearum]
          Length = 311

 Score =  127 bits (318), Expect = 8e-29
 Identities = 80/226 (35%), Positives = 120/226 (53%), Gaps = 9/226 (3%)






 
Structural Features:
COG1414, IclR, Transcriptional regulator [Transcription]
CD-Length = 246 residues,  97.2% aligned
Score =  145 bits (366), Expect = 7e-36
Identities = 71/240 (29%), Positives = 105/240 (43%), Gaps = 7/240 (2%)

smart00346, HTH_ICLR, helix_turn_helix isocitrate lyase regulation
CD-Length = 91 residues,  98.9% aligned
Score = 71.7 bits (176), Expect = 8e-14
Identities = 34/90 (37%), Positives = 48/90 (53%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6075




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23217




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36865




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3036_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3036
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4902
                           PA4157_tr
                           translation of PA4157
                           262
                           99.99
                           99.99
                           0
                           1339.0
     

     
     
138898
                           gb|AAG07544.1|AE004832_4
                           (AE004832) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           262
                           99.99
                           99.99
                           0
                           1339.0
     

     






      

          
GC ORFID: 46038How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4157Glimmer Score: 

          
Start: 4078796Stop: 4079584

          
Length: 789


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4157 translation of PA4157Homolog Bit Score 520.0

          
Other Homologs:  t_PA4157 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGGACGCCCCGGGCGAAAAGCGCTCCGGCACCATCCAGTCGGTGTCCATCGCCGCGCGCTTCCTGAAG 
ACCCTGGCCAACGCCGAAGGCGAGCTGGCCCTCGGCGAAGTGGCCCGGCGCACCGGCACCGGCGGCTCCACC 
GCGCACCGCTACCTGCAGAGCCTGGTGAAGGAAGGCCTGGCCCGCCAGGACCCGCTCAGCGGCCTCTACGAC 
CTCGGGCCGGCGGCGCTGAGCATCGGCATAGGCGCGCTGAAGCGGATCGACGCGGTGGATATCGCCGCCCGC 
CACATGAAGGCCCTGGCCCAACGGCATGCCGCCAGCGGCGGGGTGGCGATCTGGACCGAGCGCGGCCCGACC 
CTGGTGCGCTGGTACCGCAGCGCCTATTTCTCGATCAACCCGCTGGCCCTGGGCGATATCCTGCCCATCGAC 
AATACCGCTTGCGGCCTGGTGTTCCAGGCCTTCCTGCCGAAGGCCGTGGTCGACGCCGCGCGCAAGCAGCAA 
CCGGCGCACTTCCGCGGCAGCCCGCCGAGCCGCGCGCTGCTCGACGAGGTGCGCGAGCGCTGCTGGGCCGAA 
CTGACCAGCCACCTGCTGTCGAACGTCACCGGCCAGGCGGCGCCGGTGTTCGACGCCCAGCAGGAGATCGTC 
TGCGCCATGACCACGGTGACCGATCTCGGCCAGTTGCAGTCGGCGGAAGACCGCGACGCGCTGTTCCACGAG 
GCGCTGCAGGTCAACCAGTCCACCGGCGGCCTGGTCCTCCATCCCGGCATGCGGCCGCCGCCGCGCTGA