ViewGene
Locus Name:
GeneID:
Location:

GeneID:3034
TrivialName: PA14_29480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29480
PAO1 Ortholog Locus:PA2678
Sequence Length:804
Protein Length:267
Start: 2556397
Stop: 2557200
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06066.1|AE004695_19 (AE004695) probable permease of ABC-2 transporter [Pseudomonas aeruginosa PAO1]
Identities = 266/267 (99%), Positives = 266/267 (99%)
Sequence:
GTGAGTGGTTCCCTCTTGGTACCGGCCAGTCTCGCCAGTCGCATCAGGCTCCTGCTGGTCATGACCCGGCGC
GAGGTCGAACTGCGTTATCGCGACGCCATGTTGGGCCGCATCTGGATCATCGTCTCGCCGTTCCTGCTCTTG
CTGATCTATACGTTTGTCTTCGGCTTTGTGCTGAAGTCGCGCTGGGGTGGAAGCCAGAGCACGCTTTCCTTC
GCCTTGACCCTGTTTTCCGGACTCCTGCTGAACGGGATCCTCGCTGAAAGCCTGTCCAGGGCCCCGACTATC
ATCCAGGCCAACGCCAACTACGTGAAGAAGCTGGTTTTTCCCCTGGAGATACTCCCCCTCACACCGCTGCTG
GCCGCATTCTTCAACGCCATGCTCGGCTACCTGGTGCTCTGTATCTTTCTTCTCTTCAGCGGCGTCGAGCCG
GGCTGGCAACTGGTTCTGCTACCGCTTGCCCTGCTCCCCTTCCTGCTCTGCGTGACGGGGCTGGCGTGGTTC
CTCGCGGGGCTCGGGGTCTATGTTCGCGACATAGGGCAGTTCGTCCAGTTTCTCCTGGTGCTTCTGCTATTC
ATCAGCCCGGTGTTCTATCCGCTGTCATCCTTGCCACCGGTAATGCAGCCCTACCTGTACCTCAATCCGCTG
ACGATCCCGGTGGAAATGGTCAGGGCGATCCTTTTCGATGCTCCCTATCCGACCCTTGAGGTCTTCAGCGTT
TATTGCGTTGCGTCGCTGCTGGTCTGTTCATCGGGCTTCCTCTGGTTCCGTCGGGTACAGGAAGGTTTTGCA
GATGTCCTCTGA
Translation:
MSGSLLVPASLASRIRLLLVMTRREVELRYRDAMLGRIWIIVSPFLLLLIYTFVFGFVLKSRWGGSQSTLSF
ALTLFSGLLLNGILAESLSRAPTIIQANANYVKKLVFPLEILPLTPLLAAFFNAMLGYLVLCIFLLFSGVEP
GWQLVLLPLALLPFLLCVTGLAWFLAGLGVYVRDIGQFVQFLLVLLLFISPVFYPLSSLPPVMQPYLYLNPL
TIPVEMVRAILFDAPYPTLEVFSVYCVASLLVCSSGFLWFRRVQEGFADVL*
AnnotationID:3042GeneID:3034
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 18:06:05
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC-2 transporter
Cell Localization:()
Synonyms:wzm
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1682,pfam01061
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD84383.1| (BX321857) ABC 2 transport system integral membrane protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 272

 Score =  225 bits (574), Expect = 2e-58
 Identities = 114/260 (43%), Positives = 170/260 (65%), Gaps = 3/260 (1%)

>gb|AAC00181.1| (AF038816) putative ABC transporter system integral membrane
           protein [Serratia marcescens]
          Length = 277

 Score =  223 bits (568), Expect = 9e-58
 Identities = 116/267 (43%), Positives = 171/267 (64%), Gaps = 8/267 (2%)








 
Structural Features:
COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, 
permease component 
[Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
CD-Length = 263 residues,  99.2% aligned
Score =  166 bits (422), Expect = 3e-42
Identities = 100/267 (37%), Positives = 155/267 (58%), Gaps = 6/267 (2%)

pfam01061, ABC2_membrane, ABC-2 type transporter.
CD-Length = 254 residues,  99.2% aligned
Score =  154 bits (390), Expect = 1e-38
Identities = 98/255 (38%), Positives = 152/255 (59%), Gaps = 3/255 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14725




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23213




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36349




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3034_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3034
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4900
                           PA2678_tr
                           translation of PA2678
                           267
                           99.62
                           99.62
                           0
                           1339.0
     

     
     
138830
                           gb|AAG06066.1|AE004695_19
                           (AE004695) probable permease of ABC-2 transporter [Pseudomonas aeruginosa PAO1]
                           267
                           99.25
                           99.62
                           0
                           1336.0
     

     
     
138833
                           gb|AAO20846.1|
                           (AF337647) putative ABC transporter system integral membrane protein [Xanthomonas oryzae pv. oryzae]
                           277
                           44.04
                           63.17
                           15
                           571.0
     

     
     
138835
                           gb|AAK27395.1|
                           (AY028370) putative ABC-2 transporter integral membrane component [Burkholderia mallei]
                           280
                           42.14
                           61.07
                           16
                           568.0
     

     
     
138834
                           gb|AAD05458.1|
                           (AF064070) putative ABC-2 transporter integral membrane component [Burkholderia pseudomallei]
                           280
                           42.14
                           61.42
                           16
                           571.0
     

     






      

          
GC ORFID: 46036How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2678Glimmer Score: 

          
Start: 2397529Stop: 2396726

          
Length: 804


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2678 translation of PA2678Homolog Bit Score 520.0

          
Other Homologs:  t_PA2678 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGTGGTTCCCTCTTGGTACCGGCCAGTCTCGCCAGTCGCATCAGGCTCCTGCTGGTCATGACCCGGCGC 
GAGGTCGAACTGCGTTATCGCGACGCCATGTTGGGCCGCATCTGGATCATCGTCTCGCCGTTCCTGCTCTTG 
CTGATCTATACGTTTGTCTTCGGCTTTGTGCTGAAGTCGCGCTGGGGTGGAAGCCAGAGCACGCTTTCCTTC 
GCCTTGACCCTGTTTTCCGGACTCCTGCTGAACGGGATCCTCGCTGAAAGCCTGTCCAGGGCCCCGACTATC 
ATCCAGGCCAACGCCAACTACGTGAAGAAGCTGGTTTTTCCCCTGGAGATACTCCCCCTCACACCGCTGCTG 
GCCGCATTCTTCAACGCCATGCTCGGCTACCTGGTGCTCTGTATCTTTCTTCTCTTCAGCGGCGTCGAGCCG 
GGCTGGCAACTGGTTCTGCTACCGCTTGCCCTGCTCCCCTTCCTGCTCTGCGTGACGGGGCTGGCGTGGTTC 
CTCGCGGGGCTCGGGGTCTATGTTCGCGACATAGGGCAGTTCGTCCAGTTTCTCCTGGTGCTTCTGCTATTC 
ATCAGCCCGGTGTTCTATCCGCTGTCATCCTTGCCACCGGTAATGCAGCCCTACCTGTACCTCAATCCGCTG 
ACGATCCCGGTGGAAATGGTCAGGGCGATCCTTTTCGATGCTCCCTATCCGACCCTTGAGGTCTTCAGCGTT 
TATTGCGTTGCGTCGCTGCTGGTCTGTTCATCGGGCTTCCTCTGGTTCCGTCGGGTACAGGAAGGTTTTGCA 
GATGTCCTCTGA