ViewGene
Locus Name:
GeneID:
Location:

GeneID:3033
TrivialName: PA14_06770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06770
PAO1 Ortholog Locus:PA0520
Sequence Length:783
Protein Length:260
Start: 590293
Stop: 591075
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03909.1|AE004489_1 (AE004489) regulatory protein NirQ [Pseudomonas aeruginosa PAO1]
Identities = 258/260 (99%), Positives = 258/260 (99%)
Sequence:
ATGCGGGACGCGACACCCTTCTACGAGGCCACCGGCCATGAGATCGAAGTCTTCGAGCGCGCCTGGCGGCAC
GGCCTGCCGGTATTGCTCAAGGGCCCCACCGGTTGCGGCAAGACCCGCTTCGTCCAGTACATGGCGCGGCGC
CTGGAACTGCCGCTGTACAGCGTCGCCTGCCACGACGACCTGGGCGCCGCCGACCTGCTCGGCCGCCATCTG
ATCGGCGCCGACGGCACCTGGTGGCAGGACGGCCCGCTGACCCGCGCGGTGCGCGAAGGCGGTATCTGCTAC
CTGGACGAAGTGGTGGAGGCGCGCCAGGACACCACGGTCGCCATCCACCCGCTGGCCGACGACCGCCGCGAG
CTGTACCTGGAGCGCACCGGCGAGACGTTGCAGGCGCCGCCTTCGTTCATGCTGGTGGTGTCCTACAACCCC
GGCTACCAGAACCTGCTCAAGGGCCTGAAGCCCAGCACCCGGCAGCGTTTCGTCGCGTTGCGCTTCGACTAC
CCGGCGGCGCAGCACGAGGCACGCATCCTGGTCGGCGAGAGCGGTTGTGCCGAGGCCCTGGCGCAGCGCCTG
GTGCAGTTGGGCCAGGCGCTGCGGCGGCTGGAGCAGCACGACCTGGAGGAAGTCGCCTCGACCCGCCTGCTG
ATCTTCGCCGCGCGCCTCATCGGCGACGGCATGGACCCGCGCGAGGCGTGCCGGGTGGCGCTGGCCGAACCG
CTCTCGGACGACCCGGCGACGGTGGCGGCGCTGATGGACATCGTCGATCTCCATGTCGCCTGA
Translation:
MRDATPFYEATGHEIEVFERAWRHGLPVLLKGPTGCGKTRFVQYMARRLELPLYSVACHDDLGAADLLGRHL
IGADGTWWQDGPLTRAVREGGICYLDEVVEARQDTTVAIHPLADDRRELYLERTGETLQAPPSFMLVVSYNP
GYQNLLKGLKPSTRQRFVALRFDYPAAQHEARILVGESGCAEALAQRLVQLGQALRRLEQHDLEEVASTRLL
IFAARLIGDGMDPREACRVALAEPLSDDPATVAALMDIVDLHVA*
AnnotationID:3041GeneID:3033
AnnotatorUID: diggins
Modification Date/Time: 2004-08-15 15:03:47
Gene Name:nirQ
Confidence Code:1
GeneProduct:regulatory protein NirQ
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:ATP/GTP binding protein
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAG34380.1|AF197466_3 (AF197466) ATP/GTP binding protein; NirQ [Pseudomonas fluorescens]
          Length = 267

 Score =  421 bits (1081), Expect = e-117
 Identities = 201/253 (79%), Positives = 225/253 (88%)

>emb|CAA78998.1| (Z17423) NirQ protein [Pseudomonas stutzeri]
          Length = 275

 Score =  409 bits (1051), Expect = e-114
 Identities = 194/253 (76%), Positives = 221/253 (87%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:6069




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23211




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33828




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3033_cdd.html


    		




 
URL:

















    ReferenceID:35301




  
Author/Investigator(s):
        Arai H, Igarashi Y, Kodama T.





  
Title:
        Structure and ANR-dependent transcription of the nir genes for denitrification from Pseudomonas aeruginosa.




  
PubMed:
        7765251


MedLine:
        




    
Source:
Biosci Biotechnol Biochem. 1994 Jul;58(7):1286-91.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7765251









           
Homologs By Global Alignment 

           

       



     
Gene ID:3033
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4899
                           PA0520_tr
                           translation of PA0520
                           260
                           99.23
                           99.23
                           0
                           1342.0
     

     
     
138801
                           gb|AAG03909.1|AE004489_1
                           (AE004489) regulatory protein NirQ [Pseudomonas aeruginosa PAO1]
                           260
                           99.23
                           99.23
                           0
                           1342.0
     

     
     
138802
                           dbj|BAA07123.1|
                           (D37883) NirQ protein [Pseudomonas aeruginosa]
                           260
                           99.23
                           99.23
                           0
                           1342.0
     

     
     
138803
                           gb|AAG34380.1|AF197466_3
                           (AF197466) ATP/GTP binding protein; NirQ [Pseudomonas fluorescens]
                           267
                           75.28
                           84.26
                           7
                           1076.0
     

     
     
138804
                           emb|CAA78998.1|
                           (Z17423) NirQ protein [Pseudomonas stutzeri]
                           276
                           71.01
                           80.79
                           17
                           1047.0
     

     






      

          
GC ORFID: 46035How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0520Glimmer Score: 

          
Start: 6391635Stop: 6392417

          
Length: 783


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0520 translation of PA0520Homolog Bit Score 521.0

          
Other Homologs:  t_PA0520 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGGGACGCGACACCCTTCTACGAGGCCACCGGCCATGAGATCGAAGTCTTCGAGCGCGCCTGGCGGCAC 
GGCCTGCCGGTATTGCTCAAGGGCCCCACCGGTTGCGGCAAGACCCGCTTCGTCCAGTACATGGCGCGGCGC 
CTGGAACTGCCGCTGTACAGCGTCGCCTGCCACGACGACCTGGGCGCCGCCGACCTGCTCGGCCGCCATCTG 
ATCGGCGCCGACGGCACCTGGTGGCAGGACGGCCCGCTGACCCGCGCGGTGCGCGAAGGCGGTATCTGCTAC 
CTGGACGAAGTGGTGGAGGCGCGCCAGGACACCACGGTCGCCATCCACCCGCTGGCCGACGACCGCCGCGAG 
CTGTACCTGGAGCGCACCGGCGAGACGTTGCAGGCGCCGCCTTCGTTCATGCTGGTGGTGTCCTACAACCCC 
GGCTACCAGAACCTGCTCAAGGGCCTGAAGCCCAGCACCCGGCAGCGTTTCGTCGCGTTGCGCTTCGACTAC 
CCGGCGGCGCAGCACGAGGCACGCATCCTGGTCGGCGAGAGCGGTTGTGCCGAGGCCCTGGCGCAGCGCCTG 
GTGCAGTTGGGCCAGGCGCTGCGGCGGCTGGAGCAGCACGACCTGGAGGAAGTCGCCTCGACCCGCCTGCTG 
ATCTTCGCCGCGCGCCTCATCGGCGACGGCATGGACCCGCGCGAGGCGTGCCGGGTGGCGCTGGCCGAACCG 
CTCTCGGACGACCCGGCGACGGTGGCGGCGCTGATGGACATCGTCGATCTCCATGTCGCCTGA