ViewGene
Locus Name:
GeneID:
Location:

GeneID:3032
TrivialName: PA14_67370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67370
PAO1 Ortholog Locus:PA5101
Sequence Length:798
Protein Length:265
Start: 6018133
Stop: 6017336
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08486.1|AE004923_2 (AE004923) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 260/265 (98%), Positives = 260/265 (98%)
Sequence:
ATGATCGATACCCCGGTGGTGGCGGCGCTGGACATGTATGTCGAGCCGGACTGCGTCAGGCAGGCCGGCGCA
ACCTTCATCGGCGAGGTCTGCCGGCGCCTGGGCGTGCGCCGTTACGCGCCGGCCGCCGCCGATCTGGCGGTG
CAGTGGCGACAGCCTAACCTGCTGTTCGCGCAGACCTGCGGCTATCCGCTGATGACCCAGTTGCGCGGCCAG
GTGGCGGTGCTCGCGGTGCCCAGCTACGACTTGCCCGATTGCGCTCCCGGCGAGCATTGCAGTCTGTTCGTC
GCCGCCGAAGGACAGGCGCGCCAGCGCCTCGGCGACTTCCGCAATACCCGCCTGGCGCTCAACGACCGCGAC
TCCAACAGCGGCATGAACCTGCTGCGCCATGCGCTGGCGCCGCTGGGGCGAGACTCGGCGTTCTTCGCCGAA
GTGCGCATCAGCGGCGGCCACCTGCGCAGCCTGGCGATGGTGGCCGCGGGTGAGGTCGAGCTGACCTCGGTG
GATGCAGTGACCTTCGGCTACCTGCAACGCCACGCACCGGAGCGCCTGGCCGGCCTGCGCGTGCTCGGGCGC
AGCGCGCCGAGCCCGGCCTTGCCGCTGATCACCTCGCTGCACTGGAGTGCGGCGCAACGCCGCGAGCTGTTC
GAAGCGCTGAACCTGACGCTGATCGAGTGCCCGCACCTGGCCGCGACACTGGCGCTGAAAAGCTTCCTCCCG
GCCGGCGAGGAGCATTACCGGATTCTCCTCGACTACGAGCGTCAGGCGCAGGGCTGGGGTTACCCGCAATTG
CGCTGA
Translation:
MIDTPVVAALDMYVEPDCVRQAGATFIGEVCRRLGVRRYAPAAADLAVQWRQPNLLFAQTCGYPLMTQLRGQ
VAVLAVPSYDLPDCAPGEHCSLFVAAEGQARQRLGDFRNTRLALNDRDSNSGMNLLRHALAPLGRDSAFFAE
VRISGGHLRSLAMVAAGEVELTSVDAVTFGYLQRHAPERLAGLRVLGRSAPSPALPLITSLHWSAAQRRELF
EALNLTLIECPHLAATLALKSFLPAGEEHYRILLDYERQAQGWGYPQLR*
AnnotationID:3040GeneID:3032
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 07:07:26
Gene Name:
Confidence Code:3
GeneProduct:putative ABC-type phosphate/phosphonate transport system, periplasmic component
Cell Localization:()
Synonyms:PA5101
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3221
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3221, PhnD, ABC-type phosphate/phosphonate transport system, 
periplasmic component 
[Inorganic ion transport and metabolism]
CD-Length = 299 residues,  89.6% aligned
Score =  188 bits (479), Expect = 6e-49
Identities = 59/269 (21%), Positives = 104/269 (38%), Gaps = 9/269 (3%)








   
Genomic Context:






   
Comment:


















    ReferenceID:6067




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23209




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34927




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3032_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3032
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4898
                           PA5101_tr
                           translation of PA5101
                           265
                           98.11
                           98.11
                           0
                           1343.0
     

     
     
138800
                           gb|AAG08486.1|AE004923_2
                           (AE004923) hypothetical protein PA5101 [Pseudomonas aeruginosa PAO1]
                           265
                           98.11
                           98.11
                           0
                           1343.0
     

     






      

          
GC ORFID: 46034How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5101Glimmer Score: 

          
Start: 5281818Stop: 5281021

          
Length: 798


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5101 translation of PA5101Homolog Bit Score 521.0

          
Other Homologs:  t_PA5101 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGATACCCCGGTGGTGGCGGCGCTGGACATGTATGTCGAGCCGGACTGCGTCAGGCAGGCCGGCGCA 
ACCTTCATCGGCGAGGTCTGCCGGCGCCTGGGCGTGCGCCGTTACGCGCCGGCCGCCGCCGATCTGGCGGTG 
CAGTGGCGACAGCCTAACCTGCTGTTCGCGCAGACCTGCGGCTATCCGCTGATGACCCAGTTGCGCGGCCAG 
GTGGCGGTGCTCGCGGTGCCCAGCTACGACTTGCCCGATTGCGCTCCCGGCGAGCATTGCAGTCTGTTCGTC 
GCCGCCGAAGGACAGGCGCGCCAGCGCCTCGGCGACTTCCGCAATACCCGCCTGGCGCTCAACGACCGCGAC 
TCCAACAGCGGCATGAACCTGCTGCGCCATGCGCTGGCGCCGCTGGGGCGAGACTCGGCGTTCTTCGCCGAA 
GTGCGCATCAGCGGCGGCCACCTGCGCAGCCTGGCGATGGTGGCCGCGGGTGAGGTCGAGCTGACCTCGGTG 
GATGCAGTGACCTTCGGCTACCTGCAACGCCACGCACCGGAGCGCCTGGCCGGCCTGCGCGTGCTCGGGCGC 
AGCGCGCCGAGCCCGGCCTTGCCGCTGATCACCTCGCTGCACTGGAGTGCGGCGCAACGCCGCGAGCTGTTC 
GAAGCGCTGAACCTGACGCTGATCGAGTGCCCGCACCTGGCCGCGACACTGGCGCTGAAAAGCTTCCTCCCG 
GCCGGCGAGGAGCATTACCGGATTCTCCTCGACTACGAGCGTCAGGCGCAGGGCTGGGGTTACCCGCAATTG 
CGCTGA