ViewGene
Locus Name:
GeneID:
Location:

GeneID:3031
TrivialName: PA14_61530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61530
PAO1 Ortholog Locus:PA4651
Sequence Length:789
Protein Length:262
Start: 5488704
Stop: 5489492
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08038.1|AE004879_4 (AE004879) probable pili assembly chaperone [Pseudomonas aeruginosa PAO1]
Identities = 254/262 (96%), Positives = 256/262 (97%)
Sequence:
ATGTCCAGTCCACACCTACCTCTCCGCCCCGGCCGCTGGCTTGCGGCGCTGCTGGCGCTGTTCCTGGGCGGC
CCGACACAAGCCGCCAGTGCGGTGCTGATCTGGCCGATCAACCCGGCCATCGAAGCCGACCAACCGGCCACG
GCGCTGTGGCTGGAGAATCGCGGCAAGCAACCGGTGGTCCTGCAGGTGCGCGTGCTCGGCTGGTCCCAGGCG
GATTTCCAGGACGTCTATCGCAACCAGCAGGCAGTGATTCCCAGCCCGCCCTTCGTCAAGGTCGAGCCGGGC
CGCCGACAACTGGTCCGGCTGATCCGCCAGGGCGGCCAGCCCAGCACGCCGGAGGACGCCTATCGGGTGCTG
ATCGACGAAGTGCCCGACGGCAGCGCGGGGCAGACGCAACGAAGCCCCGGTCTCGCCCTGCAGTTCCAGATG
CGCTATTCGGTGCCGCTGTTCGTCAGCGCCGACGGCGTCTGGACCCAGCCCCGCAGCGATGTCGAGCGCGAC
CCGGCCGACGCGACCCGGCCGAAGCTGGCCTGGCGGCTGGTCGAGGAACAGGGCAAGCGTTACCTGCAGGTG
CGCAACGAGGGTAGCGTGCACGCCCGCCTGAGCCATGTCCGCTGGGAGGGCAACGGCCGCAGCCTGGCGCTG
CTGGACGGCCTGCTCGGCTACGTGCTGCCCGGCCAGCAGATGCGCTGGCCGCTGCCGCCGGGGCTGCTGCCG
GACGCCGGCATGACCCTGAAACTGCAACTGGCGGACAACGACGCGCCGATCAGCGTTCCCGGCTACTGA
Translation:
MSSPHLPLRPGRWLAALLALFLGGPTQAASAVLIWPINPAIEADQPATALWLENRGKQPVVLQVRVLGWSQA
DFQDVYRNQQAVIPSPPFVKVEPGRRQLVRLIRQGGQPSTPEDAYRVLIDEVPDGSAGQTQRSPGLALQFQM
RYSVPLFVSADGVWTQPRSDVERDPADATRPKLAWRLVEEQGKRYLQVRNEGSVHARLSHVRWEGNGRSLAL
LDGLLGYVLPGQQMRWPLPPGLLPDAGMTLKLQLADNDAPISVPGY*
AnnotationID:3039GeneID:3031
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 05:05:19
Gene Name:
Confidence Code:3
GeneProduct:putative pili assembly chaperone
Cell Localization:()
Synonyms:csuC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:putative type 1 pili usher pathway chaperone CsuC
Functional Category Confidence Code:5
COGs:COG3121
Secondary Functional Category(ies):chaperones & heat shock proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67974.1|AE016429_10 (AE016782) type 1 pili usher pathway chaperone CsuC [Pseudomonas
           putida KT2440]
          Length = 264

 Score =  216 bits (550), Expect = 1e-55
 Identities = 109/225 (48%), Positives = 146/225 (64%), Gaps = 2/225 (0%)

>gb|AAM85426.1|AE013789_3 (AE013789) putative pilus assembly chaperone [Yersinia pestis KIM]
          Length = 250

 Score =  185 bits (469), Expect = 3e-46
 Identities = 101/238 (42%), Positives = 141/238 (59%), Gaps = 12/238 (5%)








 
Structural Features:
COG3121, FimC, P pilus assembly protein, chaperone PapD 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 235 residues,  97.0% aligned
Score =  135 bits (340), Expect = 7e-33
Identities = 62/255 (24%), Positives = 105/255 (41%), Gaps = 28/255 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:6065




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23207




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37587




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3031_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3031
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4897
                           PA4651_tr
                           translation of PA4651
                           262
                           96.94
                           97.70
                           0
                           1341.0
     

     
     
138796
                           gb|AAG08038.1|AE004879_4
                           (AE004879) probable pili assembly chaperone [Pseudomonas aeruginosa PAO1]
                           262
                           96.94
                           97.70
                           0
                           1341.0
     

     
     
138797
                           gb|AAN67974.1|AE016429_10
                           (AE016782) type 1 pili usher pathway chaperone CsuC [Pseudomonas putida KT2440]
                           268
                           44.02
                           59.70
                           10
                           543.0
     

     
     
138798
                           gb|AAM85426.1|AE013789_3
                           (AE013789) putative pilus assembly chaperone [Yersinia pestis KIM]
                           268
                           40.67
                           56.71
                           24
                           478.0
     

     
     
138799
                           emb|CAC90517.1|
                           (AJ414150) putative chaperone protein [Yersinia pestis CO92]
                           268
                           40.67
                           56.71
                           24
                           478.0
     

     






      

          
GC ORFID: 46033How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4651Glimmer Score: 

          
Start: 4752384Stop: 4753172

          
Length: 789


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4651 translation of PA4651Homolog Bit Score 521.0

          
Other Homologs:  t_PA4651 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAGTCCACACCTACCTCTCCGCCCCGGCCGCTGGCTTGCGGCGCTGCTGGCGCTGTTCCTGGGCGGC 
CCGACACAAGCCGCCAGTGCGGTGCTGATCTGGCCGATCAACCCGGCCATCGAAGCCGACCAACCGGCCACG 
GCGCTGTGGCTGGAGAATCGCGGCAAGCAACCGGTGGTCCTGCAGGTGCGCGTGCTCGGCTGGTCCCAGGCG 
GATTTCCAGGACGTCTATCGCAACCAGCAGGCAGTGATTCCCAGCCCGCCCTTCGTCAAGGTCGAGCCGGGC 
CGCCGACAACTGGTCCGGCTGATCCGCCAGGGCGGCCAGCCCAGCACGCCGGAGGACGCCTATCGGGTGCTG 
ATCGACGAAGTGCCCGACGGCAGCGCGGGGCAGACGCAACGAAGCCCCGGTCTCGCCCTGCAGTTCCAGATG 
CGCTATTCGGTGCCGCTGTTCGTCAGCGCCGACGGCGTCTGGACCCAGCCCCGCAGCGATGTCGAGCGCGAC 
CCGGCCGACGCGACCCGGCCGAAGCTGGCCTGGCGGCTGGTCGAGGAACAGGGCAAGCGTTACCTGCAGGTG 
CGCAACGAGGGTAGCGTGCACGCCCGCCTGAGCCATGTCCGCTGGGAGGGCAACGGCCGCAGCCTGGCGCTG 
CTGGACGGCCTGCTCGGCTACGTGCTGCCCGGCCAGCAGATGCGCTGGCCGCTGCCGCCGGGGCTGCTGCCG 
GACGCCGGCATGACCCTGAAACTGCAACTGGCGGACAACGACGCGCCGATCAGCGTTCCCGGCTACTGA