ViewGene
Locus Name:
GeneID:
Location:

GeneID:3030
TrivialName: PA14_56210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56210
PAO1 Ortholog Locus:PA4327
Sequence Length:807
Protein Length:268
Start: 5018512
Stop: 5019318
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07715.1|AE004849_2 (AE004849) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 265/268 (98%), Positives = 265/268 (98%)
Sequence:
ATGCGCTTCGCCCGCCGTCTCGTCCTGCTCCCGTTGCTGTCGCTGCTGGCCGCCTGCTCGCCGACCACGCCG
CTGTTCGTCGCCCAGGTGACCACTGGCGAAGTCGCCGAATACAAGCAGATGAAGAGCAACCGCATGACCGCC
GCCATCGAGGAGGAAGGCGACCTGCTGACCTACAGCGCCATGGCGATCCGCGACAACAGGAGCACCGAGGCG
GAGAAGCTCTACCTCACCGGCTACGACAATAGCCGCTACAGCGCCGAAGTGCGCGGTATCTCGCTGTACCAG
ATCGGCCTGATCTACATGAGCCGCTACAACGACCAGCGCGACGACGCCAAGGCCACCGACTACTTCCAGCGC
GTGGTCCGCGAGTTCCCCGGCACCCACGCCGCCGAGCATGCCCAGGCGCGCCTGCTGGCGATGCGCCAGCGA
GCCAGGGAGCCGGTGCAGAAGAGCGCCCGCGAATTGCTCGCCACCTGGAAGCCACAGCAGAACCTCGACCTC
TACAAGACCAGCCTCGACCCGGACATGACCCTGCTGTCGCGCCGCGCGGTGCTCAAGGATCGCGTCGACGAG
GCCGCCGAACTCTACCTGCTGGCGGTCAACGATCCGGCGATTCCTGCCGGTATAAAGGAAAAGGCCCTCTAC
CAGCTCGGCCTGATGTACCTGGCGCCGGACAACCCGCACCCAAACCGCGACAAGGCCATCGAATACCTGCGC
CGCCAGTTGCTCGACTATCCTGAAGGCGAATTGTCGAACAAGGCCAGCCGGCACCTCGACCAGGCGCTCAAC
GTGCAACCGCGCTGA
Translation:
MRFARRLVLLPLLSLLAACSPTTPLFVAQVTTGEVAEYKQMKSNRMTAAIEEEGDLLTYSAMAIRDNRSTEA
EKLYLTGYDNSRYSAEVRGISLYQIGLIYMSRYNDQRDDAKATDYFQRVVREFPGTHAAEHAQARLLAMRQR
AREPVQKSARELLATWKPQQNLDLYKTSLDPDMTLLSRRAVLKDRVDEAAELYLLAVNDPAIPAGIKEKALY
QLGLMYLAPDNPHPNRDKAIEYLRRQLLDYPEGELSNKASRHLDQALNVQPR*
AnnotationID:3038GeneID:3030
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 13:01:11
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4327
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:6063




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:23205




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3030
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
4896
                           PA4327_tr
                           translation of PA4327
                           268
                           98.88
                           98.88
                           0
                           1343.0
     

     
     
138795
                           gb|AAG07715.1|AE004849_2
                           (AE004849) hypothetical protein PA4327 [Pseudomonas aeruginosa PAO1]
                           268
                           98.88
                           98.88
                           0
                           1343.0
     

     






      

          
GC ORFID: 46032How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4327Glimmer Score: 

          
Start: 4282188Stop: 4282994

          
Length: 807


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4327 translation of PA4327Homolog Bit Score 521.0

          
Other Homologs:  t_PA4327 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCTTCGCCCGCCGTCTCGTCCTGCTCCCGTTGCTGTCGCTGCTGGCCGCCTGCTCGCCGACCACGCCG 
CTGTTCGTCGCCCAGGTGACCACTGGCGAAGTCGCCGAATACAAGCAGATGAAGAGCAACCGCATGACCGCC 
GCCATCGAGGAGGAAGGCGACCTGCTGACCTACAGCGCCATGGCGATCCGCGACAACAGGAGCACCGAGGCG 
GAGAAGCTCTACCTCACCGGCTACGACAATAGCCGCTACAGCGCCGAAGTGCGCGGTATCTCGCTGTACCAG 
ATCGGCCTGATCTACATGAGCCGCTACAACGACCAGCGCGACGACGCCAAGGCCACCGACTACTTCCAGCGC 
GTGGTCCGCGAGTTCCCCGGCACCCACGCCGCCGAGCATGCCCAGGCGCGCCTGCTGGCGATGCGCCAGCGA 
GCCAGGGAGCCGGTGCAGAAGAGCGCCCGCGAATTGCTCGCCACCTGGAAGCCACAGCAGAACCTCGACCTC 
TACAAGACCAGCCTCGACCCGGACATGACCCTGCTGTCGCGCCGCGCGGTGCTCAAGGATCGCGTCGACGAG 
GCCGCCGAACTCTACCTGCTGGCGGTCAACGATCCGGCGATTCCTGCCGGTATAAAGGAAAAGGCCCTCTAC 
CAGCTCGGCCTGATGTACCTGGCGCCGGACAACCCGCACCCAAACCGCGACAAGGCCATCGAATACCTGCGC 
CGCCAGTTGCTCGACTATCCTGAAGGCGAATTGTCGAACAAGGCCAGCCGGCACCTCGACCAGGCGCTCAAC 
GTGCAACCGCGCTGA