ViewGene
Locus Name:
GeneID:
Location:

GeneID:303
TrivialName: PA14_33190
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33190
PAO1 Ortholog Locus:PA2431
Sequence Length:2175
Protein Length:724
Start: 2904651
Stop: 2906825
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05819.1|AE004670_7 (AE004670) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 718/724 (99%), Positives = 721/724 (99%) with PA2431.
Sequence:
ATGGAAGGGCTGAAACTCTACGCCCGCTTGCTCTGGCGGCAGCCGCGGGAAACCCTGCTGTTCGCCCTGCGC
ACCGTCGCCGCCGGGCTGCTGACCCTCTACCTGGCCTTCCTCTTCGACCTGGAGCAGCCGAAGTGGGCGCTG
ATGACCGTGGTCATCGTCAGCCAGCCGCTGGCCGGGATGGCTCTCAAGCGCAGCTTCGCCCAGGTCGTCGGT
ACCTTCGCCGGCGCCGTGGTGGCGGTGCTGATCATGGCGCTGTTCGCCCAGCAACCGTTGCCGTTCTTCGTC
GCCCTGGGACTCTGGCTGGCGCTCTGCACCGCCGGCGGCACCTTGCTGCGCTACACCGATTCGCACGCCTTC
GTGCTCAGCGGCTTCACCGCGGTGATCGTCGCCGTGCTGTCGATTCCCGATCCGGAAAACACCTTCATGCTC
GCCGTGGTGCGGGTCACCGAGACCCTGCTGGGCGTCGCCTGCGTGGCCCTGGTCAGCCTGCTCAGCGCGCGT
CCGCAGGCGGTGGCGAAGGGCTACTTCGCCCAGGTCGACGGCCTGATCCGCAGTACCGCGCGGCACGCCGCG
GCGGTGATCCGCGGCGACGAGGGCGACGAGTCGTTCAACCAGCGGCAGATGCAACTGGTCGCCAGCATCACC
GCGCTGGACGGCCTGCGCCGGCACCTCTATTTCGACGCGCCGAACCTGCGCCGCGCCGATGGCCTGGTGCAG
TTGCTGGGCAACCTGCTGGTGCTGATGGCCTCGCGGCTGTTGCTGCTGCGCCAGCATCGCCTGCTGGTGCGG
GCGCACTGGGTCGGGCCGTTGCCGGCGGATATCCAGGCGCTCCTGGATCGTGCGCTGCGGGTGCTGGACGCG
CTGGCCGAGCAGGGGCGGGCGGTACCCTCCGAGGTGCTGGAGGAGTTCCAGGCGGTGCGCCAGGCCTTCGAT
GCCGCGGCGACGCGCGCGGAGTCCTACGACGAGGCGCTGAGCCCGGCGCTGCGCCCGCAGGTGGCGATCCTG
CGCTGGGAATACGCGCGGCTGTTCCAGCGCCTGGGCGAAGTGCTCGAACTCAACGATGCGATCCAGTCCGGC
CGCCAGGCCAGCAGTTTCTACCGCCGTGGCCAGGCGCAGGCGCTGCACCTGGACTGGGCGCTGGCCTCGATG
AATGCCGTGCGCGCTTTCGTCGCCTTGTCCTGCGCCGCCTGGCTGTGGATCACCAGCGCCTGGAACGGCGCC
CTCAGCAGCCTGCTGCTGGTCGGCGTGATGTGCTCGCTGATGGCGACCTTCCCGCGTCCGCTGCTGGCGGCG
CAGAACTTCCTGCGCGGGCTGCTGCTGGCGATCCTGATCTCGGCGGCGCTGCTGTTCGTGCTGTTGCCGGCA
TCCGCCGACTTCGAGTGGCTGGCGCTGTGGATGGCGTTGCTGCTGTACGTGGTCGCGGTCGGCCTGAGCAGC
CCGCTGAGCGCCGGGATCGCCATGGGCATCGGCCTGGAGACCCTGCTGATGGTGGCGCCGCAGAATATCGCG
GTCTACTACAGCAACGCTTCGCAGTGGTTCGAGTTCGTCGGCGGCTTCCTCGCCGCGGCGGTCCTCGCCGTG
CTGGTGTTCGCCCTGGTCTATCCGTTCCGCGCCGACCCGCGCCTGCGCCGGCTGCTCTACCTGTCGCGCCAG
GACGTCGCGGAAATGTCGCGCTGCGAGGCCAGCGAGGCGCAGCGCTTCGCCTTCGAGACGCGGATGATCGAT
CGCCTGGCGGTGATGGTCGGCCTGCTGCCGGCGAGCCAGGAGTCGGCTGCGGCGGAACGTTTCCAGTGCGCC
CTGGGCTGCGTGGTGATGGGCGTGGCGTTGAACCGCCTGCGCGAGCCGCTGCATGACGCCGGGGTGGTGCCG
CTGGAGTTGCAGCCGCTGCTGGGCGAGGCGCTGCGCGAGGTCGCCGCCTACATAGCCGGCGGCGCGGACGCC
CCGCGGCAGGACCTCGCCCTGGCCGCCCTGCAGCGTTTCGGCCGGGGCCTGGAGGCCTTGCTGGCGCAGCCG
TCGAAGGACCTCGGGGCGACGCGGCAGCGCTTCATCATGAATGTCGCGGTACTGATCCTGCAGCAGTCGCTG
CAACGCTATCGGACGTTGCTGGAGGAGGACCGCGGCGCACCGGCGGTCGTCGAAGAACCAGAAGAGGAGGGC
GGACATGCCCGCTGA
Translation:
MEGLKLYARLLWRQPRETLLFALRTVAAGLLTLYLAFLFDLEQPKWALMTVVIVSQPLAGMALKRSFAQVVG
TFAGAVVAVLIMALFAQQPLPFFVALGLWLALCTAGGTLLRYTDSHAFVLSGFTAVIVAVLSIPDPENTFML
AVVRVTETLLGVACVALVSLLSARPQAVAKGYFAQVDGLIRSTARHAAAVIRGDEGDESFNQRQMQLVASIT
ALDGLRRHLYFDAPNLRRADGLVQLLGNLLVLMASRLLLLRQHRLLVRAHWVGPLPADIQALLDRALRVLDA
LAEQGRAVPSEVLEEFQAVRQAFDAAATRAESYDEALSPALRPQVAILRWEYARLFQRLGEVLELNDAIQSG
RQASSFYRRGQAQALHLDWALASMNAVRAFVALSCAAWLWITSAWNGALSSLLLVGVMCSLMATFPRPLLAA
QNFLRGLLLAILISAALLFVLLPASADFEWLALWMALLLYVVAVGLSSPLSAGIAMGIGLETLLMVAPQNIA
VYYSNASQWFEFVGGFLAAAVLAVLVFALVYPFRADPRLRRLLYLSRQDVAEMSRCEASEAQRFAFETRMID
RLAVMVGLLPASQESAAAERFQCALGCVVMGVALNRLREPLHDAGVVPLELQPLLGEALREVAAYIAGGADA
PRQDLALAALQRFGRGLEALLAQPSKDLGATRQRFIMNVAVLILQQSLQRYRTLLEEDRGAPAVVEEPEEEG
GHAR*
AnnotationID:313GeneID:303
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 14:02:54
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2431
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Identical to PA2431 of PAO1, hypothetical protein.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:609




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17751




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:303
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
495
                           PA2431_tr
                           translation of PA2431
                           724
                           99.17
                           99.58
                           0
                           3558.0
     

     
     
25165
                           gb|AAG05819.1|AE004670_7
                           (AE004670) hypothetical protein PA2431 [Pseudomonas aeruginosa PAO1]
                           724
                           99.17
                           99.58
                           0
                           3558.0
     

     






      

          
GC ORFID: 43305How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2431Glimmer Score: 

          
Start: 2049265Stop: 2047091

          
Length: 2175


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2431 translation of PA2431Homolog Bit Score 1375.0

          
Other Homologs:  t_PA2431 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAGGGCTGAAACTCTACGCCCGCTTGCTCTGGCGGCAGCCGCGGGAAACCCTGCTGTTCGCCCTGCGC 
ACCGTCGCCGCCGGGCTGCTGACCCTCTACCTGGCCTTCCTCTTCGACCTGGAGCAGCCGAAGTGGGCGCTG 
ATGACCGTGGTCATCGTCAGCCAGCCGCTGGCCGGGATGGCTCTCAAGCGCAGCTTCGCCCAGGTCGTCGGT 
ACCTTCGCCGGCGCCGTGGTGGCGGTGCTGATCATGGCGCTGTTCGCCCAGCAACCGTTGCCGTTCTTCGTC 
GCCCTGGGACTCTGGCTGGCGCTCTGCACCGCCGGCGGCACCTTGCTGCGCTACACCGATTCGCACGCCTTC 
GTGCTCAGCGGCTTCACCGCGGTGATCGTCGCCGTGCTGTCGATTCCCGATCCGGAAAACACCTTCATGCTC 
GCCGTGGTGCGGGTCACCGAGACCCTGCTGGGCGTCGCCTGCGTGGCCCTGGTCAGCCTGCTCAGCGCGCGT 
CCGCAGGCGGTGGCGAAGGGCTACTTCGCCCAGGTCGACGGCCTGATCCGCAGTACCGCGCGGCACGCCGCG 
GCGGTGATCCGCGGCGACGAGGGCGACGAGTCGTTCAACCAGCGGCAGATGCAACTGGTCGCCAGCATCACC 
GCGCTGGACGGCCTGCGCCGGCACCTCTATTTCGACGCGCCGAACCTGCGCCGCGCCGATGGCCTGGTGCAG 
TTGCTGGGCAACCTGCTGGTGCTGATGGCCTCGCGGCTGTTGCTGCTGCGCCAGCATCGCCTGCTGGTGCGG 
GCGCACTGGGTCGGGCCGTTGCCGGCGGATATCCAGGCGCTCCTGGATCGTGCGCTGCGGGTGCTGGACGCG 
CTGGCCGAGCAGGGGCGGGCGGTACCCTCCGAGGTGCTGGAGGAGTTCCAGGCGGTGCGCCAGGCCTTCGAT 
GCCGCGGCGACGCGCGCGGAGTCCTACGACGAGGCGCTGAGCCCGGCGCTGCGCCCGCAGGTGGCGATCCTG 
CGCTGGGAATACGCGCGGCTGTTCCAGCGCCTGGGCGAAGTGCTCGAACTCAACGATGCGATCCAGTCCGGC 
CGCCAGGCCAGCAGTTTCTACCGCCGTGGCCAGGCGCAGGCGCTGCACCTGGACTGGGCGCTGGCCTCGATG 
AATGCCGTGCGCGCTTTCGTCGCCTTGTCCTGCGCCGCCTGGCTGTGGATCACCAGCGCCTGGAACGGCGCC 
CTCAGCAGCCTGCTGCTGGTCGGCGTGATGTGCTCGCTGATGGCGACCTTCCCGCGTCCGCTGCTGGCGGCG 
CAGAACTTCCTGCGCGGGCTGCTGCTGGCGATCCTGATCTCGGCGGCGCTGCTGTTCGTGCTGTTGCCGGCA 
TCCGCCGACTTCGAGTGGCTGGCGCTGTGGATGGCGTTGCTGCTGTACGTGGTCGCGGTCGGCCTGAGCAGC 
CCGCTGAGCGCCGGGATCGCCATGGGCATCGGCCTGGAGACCCTGCTGATGGTGGCGCCGCAGAATATCGCG 
GTCTACTACAGCAACGCTTCGCAGTGGTTCGAGTTCGTCGGCGGCTTCCTCGCCGCGGCGGTCCTCGCCGTG 
CTGGTGTTCGCCCTGGTCTATCCGTTCCGCGCCGACCCGCGCCTGCGCCGGCTGCTCTACCTGTCGCGCCAG 
GACGTCGCGGAAATGTCGCGCTGCGAGGCCAGCGAGGCGCAGCGCTTCGCCTTCGAGACGCGGATGATCGAT 
CGCCTGGCGGTGATGGTCGGCCTGCTGCCGGCGAGCCAGGAGTCGGCTGCGGCGGAACGTTTCCAGTGCGCC 
CTGGGCTGCGTGGTGATGGGCGTGGCGTTGAACCGCCTGCGCGAGCCGCTGCATGACGCCGGGGTGGTGCCG 
CTGGAGTTGCAGCCGCTGCTGGGCGAGGCGCTGCGCGAGGTCGCCGCCTACATAGCCGGCGGCGCGGACGCC 
CCGCGGCAGGACCTCGCCCTGGCCGCCCTGCAGCGTTTCGGCCGGGGCCTGGAGGCCTTGCTGGCGCAGCCG 
TCGAAGGACCTCGGGGCGACGCGGCAGCGCTTCATCATGAATGTCGCGGTACTGATCCTGCAGCAGTCGCTG 
CAACGCTATCGGACGTTGCTGGAGGAGGACCGCGGCGCACCGGCGGTCGTCGAAGAACCAGAAGAGGAGGGC 
GGACATGCCCGCTGA