ViewGene

Locus Name:
GeneID:
Location:

GeneID:3029
TrivialName: PA14_10280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_10280
PAO1 Ortholog Locus:PA4148
Sequence Length:801
Protein Length:266
Start: 886145
Stop: 885345
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07535.1|AE004831_7 (AE004831) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 266/266 (100%), Positives = 266/266 (100%)
Sequence:
ATGCACGCTACGTCGTCCGACGATTTCTCCCTGTCTTCCCGGGTCGCGCTGGTGACCGGCGCCGGACGCGGC
ATCGGCCGGGGCATCGCCCTCGCCCTGGCGCGCGCCGGCGCCGACGTGGCGGTGGCCGACCTCGATCCGCAG
GTCGCCGAGGAAACCGCCGCCGCGATCCGCAGCCTCGGTCGCCGCAGCCTGGCCCTTGGGGTCGACGTCAGC
GACGGCGACAGCGTCCGGGCTATGGTCGAGCGGGTCGCCACGGAGTTCGGCCGGCTCGACGTGGCGGTGAAC
AATGCCGGGGTGATCAGCATCCGCAAGGTCGCCGAACTCAGCCTCGCCGACTGGGACCGGGTGATGAACGTC
AACGCCCGCGGCGTGTTCCTCTGCTGCCAGGCCGAACTGCCGCTGATGCAGGCGCAGCGCTGGGGGCGGATC
GTCAACCTGTCATCGATCGCCGGCAAGGTCGGTCTCCCAGACCTCGCCCACTACTGTGCCTCGAAGTTTGCC
GTGATCGGTTTCAGCAATGCCCTGGCCAAGGAGGTCGCGCGCGACGGGGTGACGGTCAACGCGCTCTGCCCG
GGAATCGTCGGCACCGGAATGTGGCGCGGCGAGGACGGCTTGTCGGGCCGCTGGCGGCAGGCCGGCGAAAGC
GAGGCGCAGTCCTGGGAACGCCACCAGGCCAGCCTGCTGCCCCAGGGTGAGGCGCAGACCGTCGAAGACATG
GGCCAGCTCGTCGTCTACCTGGCCTGCGCGCCGCACGTCACCGGCCAGGCCATCGCCGTCGACGGCGGATTC
TCGCTATGA
Translation:
MHATSSDDFSLSSRVALVTGAGRGIGRGIALALARAGADVAVADLDPQVAEETAAAIRSLGRRSLALGVDVS
DGDSVRAMVERVATEFGRLDVAVNNAGVISIRKVAELSLADWDRVMNVNARGVFLCCQAELPLMQAQRWGRI
VNLSSIAGKVGLPDLAHYCASKFAVIGFSNALAKEVARDGVTVNALCPGIVGTGMWRGEDGLSGRWRQAGES
EAQSWERHQASLLPQGEAQTVEDMGQLVVYLACAPHVTGQAIAVDGGFSL*
AnnotationID:3037GeneID:3029
AnnotatorUID: diggins
Modification Date/Time: 2005-03-30 16:04:38
Gene Name:
Confidence Code:3
GeneProduct:putative short-chain dehydrogenase
Cell Localization:()
Synonyms:PA4148
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00106,COG1028,COG4221
Secondary Functional Category(ies):secondary metabolites, biosynthesis, transport, and catabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67436.1|AE016371_2 (AE016780) oxidoreductase, short-chain dehydrogenase/reductase
           family [Pseudomonas putida KT2440]
          Length = 253

 Score =  182 bits (463), Expect = 1e-45
 Identities = 111/257 (43%), Positives = 151/257 (58%), Gaps = 14/257 (5%)

>gb|AAO42633.1| (AF373287) putative short-chain dehydrogenase [Ralstonia eutropha]
          Length = 252

 Score =  177 bits (450), Expect = 4e-44
 Identities = 101/256 (39%), Positives = 149/256 (58%), Gaps = 17/256 (6%)

Structural Features:
pfam00106, adh_short, short chain dehydrogenase.
CD-Length = 247 residues, 100.0% aligned
Score =  210 bits (535), Expect = 2e-55
Identities = 113/252 (44%), Positives = 145/252 (57%), Gaps = 8/252 (3%)

COG1028, FabG, Dehydrogenases with different specificities 
(related to short-chain alcohol dehydrogenases) 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 251 residues, 100.0% aligned
Score =  170 bits (432), Expect = 1e-43
Identities = 118/265 (44%), Positives = 152/265 (57%), Gaps = 22/265 (8%)

COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown specificity.
CD-Length = 246 residues,  96.3% aligned
Score =  151 bits (384), Expect = 7e-38
Identities = 93/252 (36%), Positives = 132/252 (52%), Gaps = 16/252 (6%)
Genomic Context:
Comment:
ReferenceID:6061
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:23203
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36881
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3029_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3029

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
4894 PA4148_tr translation of PA4148 266 99.99 99.99 0 1342.0
138758 gb|AAG07535.1|AE004831_7 (AE004831) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1] 266 99.99 99.99 0 1342.0
138762 emb|CAB53400.1| (AL939104) putative short chain oxidoreductase [Streptomyces coelicolor A3(2)] 274 42.70 56.56 17 457.0
4895 PA1649_tr translation of PA1649 272 41.54 56.98 25 467.0
138759 gb|AAG05038.1|AE004592_9 (AE004592) probable short-chain dehydrogenase [Pseudomonas aeruginosa PAO1] 272 41.54 56.98 25 467.0
GC ORFID: 46031How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4148Glimmer Score:
Start: 4067792Stop: 4068592
Length: 801
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4148 translation of PA4148Homolog Bit Score 521.0
Other Homologs: t_PA1649 (ORF: BLASTX 182.0), t_PA4148 (ORF: GLIMMER)
GC ORF Sequence
ATGCACGCTACGTCGTCCGACGATTTCTCCCTGTCTTCCCGGGTCGCGCTGGTGACCGGCGCCGGACGCGGC
ATCGGCCGGGGCATCGCCCTCGCCCTGGCGCGCGCCGGCGCCGACGTGGCGGTGGCCGACCTCGATCCGCAG
GTCGCCGAGGAAACCGCCGCCGCGATCCGCAGCCTCGGTCGCCGCAGCCTGGCCCTTGGGGTCGACGTCAGC
GACGGCGACAGCGTCCGGGCTATGGTCGAGCGGGTCGCCACGGAGTTCGGCCGGCTCGACGTGGCGGTGAAC
AATGCCGGGGTGATCAGCATCCGCAAGGTCGCCGAACTCAGCCTCGCCGACTGGGACCGGGTGATGAACGTC
AACGCCCGCGGCGTGTTCCTCTGCTGCCAGGCCGAACTGCCGCTGATGCAGGCGCAGCGCTGGGGGCGGATC
GTCAACCTGTCATCGATCGCCGGCAAGGTCGGTCTCCCAGACCTCGCCCACTACTGTGCCTCGAAGTTTGCC
GTGATCGGTTTCAGCAATGCCCTGGCCAAGGAGGTCGCGCGCGACGGGGTGACGGTCAACGCGCTCTGCCCG
GGAATCGTCGGCACCGGAATGTGGCGCGGCGAGGACGGCTTGTCGGGCCGCTGGCGGCAGGCCGGCGAAAGC
GAGGCGCAGTCCTGGGAACGCCACCAGGCCAGCCTGCTGCCCCAGGGTGAGGCGCAGACCGTCGAAGACATG
GGCCAGCTCGTCGTCTACCTGGCCTGCGCGCCGCACGTCACCGGCCAGGCCATCGCCGTCGACGGCGGATTC
TCGCTATGA